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Revista de Biología Tropical, ISSN: 2215-2075, Vol. 71 (S1): e54882, abril 2023 (Publicado Abr. 30, 2023)
Change in the composition of fauna associated with Pocillopora spp.
(Scleractinia, Pocilloporidae) following transplantation
Benjamin R Chomitz1,5 *; https://orcid.org/0000-0002-8878-5935
Joan Anne Kleypas2; https://orcid.org/0000-0003-4851-7124
Jorge Cortés3,4; https://orcid.org/0000-0001-7004-8649
Juan José Alvarado3,4; https://orcid.org/0000-0002-2620-9115
1. Posgrado en Biología, Universidad de Costa Rica, San Pedro, San José, Costa Rica; ben@chomitz.com
(* Correspondence)
2. Climate and Global Dynamics Lab, University Corporation for Atmospheric Research, Boulder, Colorado, United
States of America; kleypas@ucar.edu
3. Centro de Investigación en Ciencias del Mar y Limnología, Universidad de Costa Rica, San Pedro, San José, Costa
Rica; jorge.cortes@ucr.ac.cr, juan.alvarado@ucr.ac.cr
4. Escuela de Biología, Universidad de Costa Rica, San Pedro, San José, Costa Rica.
5. Cooperative Institute for Marine and Atmospheric Studies, Atlantic Oceanic and Meteorological Laboratories, Miami,
Florida, United States of America.
Received 24-VIII-2022. Corrected 31-I-2023. Accepted 17-II-2023.
ABSTRACT
Introduction: Associated fauna comprises most of the diversity of a coral reef and performs ecological func-
tions essential to the reefs survival. Since Pocillopora corals harbor an important associated fauna, reef restora-
tion efforts are underway in Golfo Dulce, Costa Rica, to preserve them.
Objective: To describe changes in cryptofauna and fish communities associated with Pocillopora colonies to
better understand the succession of associated fauna following transplantation.
Methods: An experimental patch of 30 nursery-grown Pocillopora colonies and a control patch containing
no colonies were monitored for 8 months following transplantation in Golfo Dulce. Cryptofauna within each
colony and fish within each patch were observed using SCUBA to quantify temporal changes in the abundance,
diversity, and community structure of the colonies.
Results: The abundance and diversity of cryptofauna increased throughout the experiment. Obligate symbiont
decapods were the most abundant. The composition of the community of cryptofauna differed between periods
with fish in the genus Scarus as the main contributor to any differences. The increase in abundance and diversity
of cryptofauna and fish may reflect coral growth and the corresponding availability of space and environmental
complexity in the experimental patch. The composition of the cryptofauna communities was generally consistent
with other studies. However, a high density of decapod symbionts could suggest that without other Pocillopora
colonies to move to, they may crowd together despite their aggressive tendencies.
Conclusions: Pocillopora colonies will experience an increase in symbionts that could positively contribute to
the health and survival of the coral following transplantation.
Key words: ecology; symbiosis; facultative; cryptic; seasonality.
https://doi.org/10.15517/rev.biol.trop..v71iS1.54882
SUPPLEMENT
2Revista de Biología Tropical, ISSN: 2215-2075 Vol. 71 (S1): e54882, abril 2023 (Publicado Abr. 30, 2023)
INTRODUCTION
Coral reefs are the most diverse ecosys-
tems on Earth in terms of higher taxonomic
classification. Coral reefs harbor 32 of the
34 animal phyla, compared to 12 that live in
terrestrial environments (Reaka-Kudla, 1997;
Stella et al., 2011). The extraordinary biodi-
versity of coral reefs can be attributed to the
structural complexity of the corals and the
framework that they construct. This structural
complexity corresponds to a great diversifica-
tion and quantity of ecological niches that, in
turn, attract a large diversity of fauna (Stella
et al. 2011). The cryptofauna, the animals
that live in between the branches of the coral
and the reef structure, comprise the greatest
number of animal species on a reef but are
often overlooked when studying reef ecol-
ogy (Cortés et al., 2017; Glynn, 2013; Stella
et al. 2011). Corals host a variety of cryptic
organisms, many of which are symbionts that
live exclusively on particular species of corals
(Abele & Patton, 1976; Glynn, 1980; Glynn,
1983; Sin, 1999; Stella et al., 2010; Stella et al.
2011). The cryptofauna depend on the corals
for protection, food, and reproduction (Abele
& Patton, 1976; Castro, 1988; Stella et al.,
2011). In return, cryptofauna carry out critical
ecological processes within the reef ecosystem
such as protecting coral colonies and capturing
and recycling nutrients (Glynn, 2013; Glynn &
Enochs, 2011; Stella et al., 2011).
A great number of fish species also have an
ecological association with, or dependence on,
coral reefs for shelter, as direct or indirect food
sources, and as sites of reproduction (Froehlich
et al., 2021; Moeller et al., 2023). Some fish
live in closer association with the corals than
others, ranging from cryptic species living
within the branches to pelagic species that rely
on food sources derived from reefs (Reaka-
Kudla, 1997). The reef fish, in turn, provide
a variety of critical services to the reefs they
inhabit (Burkepile & Hay, 2010; Hixon, 1997;
Hixon & Bronstoff, 1996). Herbivore fish and
RESUMEN
Cambio en la composición de la fauna asociada a Pocillopora spp.
(Scleractinia, Pocilloporidae) después del trasplante.
Introducción: La fauna asociada comprende la mayor parte de la diversidad de un arrecife de coral y realiza
funciones ecológicas esenciales para la supervivencia del arrecife. Dado que los corales Pocillopora albergan
una importante fauna asociada, se están realizando esfuerzos de restauración de arrecifes en Golfo Dulce, Costa
Rica, para preservarlos.
Objetivo: Describir los cambios en la comunidad de criptofauna y peces asociados a las colonias de Pocillopora
para comprender mejor la sucesión de la fauna asociada después del trasplante.
Métodos: Un parche experimental de 30 colonias de Pocillopora cultivadas en vivero y un parche de control que
no contenía colonias fueron monitoreados durante 8 meses después del trasplante en Golfo Dulce. La criptofau-
na dentro de cada colonia y los peces dentro de cada parche se observaron usando SCUBA para cuantificar los
cambios temporales en la abundancia, diversidad y estructura de la comunidad de las colonias.
Resultados: La abundancia y diversidad de criptofauna aumentó a lo largo del experimento. Los decápodos
simbiontes obligados fueron los más abundantes. La composición de la comunidad de criptofauna difirió entre
períodos con peces del género Scarus como el principal contribuyente a cualquier diferencia. El aumento en la
abundancia y diversidad de criptofauna y peces puede reflejar el crecimiento de coral y la correspondiente dis-
ponibilidad de espacio y complejidad ambiental en el parche experimental. La composición de las comunidades
de criptofauna fue generalmente consistente con otros estudios. Sin embargo, una alta densidad de simbiontes
decápodos podría sugerir que, sin otras colonias de Pocillopora a las que trasladarse, pueden amontonarse a pesar
de sus tendencias agresivas.
Conclusiones: Las colonias de Pocillopora experimentarán un aumento de simbiontes que podrían contribuir
positivamente a la salud y supervivencia del coral después del trasplante.
Palabras claves: ecología; simbiosis; facultativo; críptico; estacionalidad.
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invertebrates graze on algae and reduce its cov-
erage so that the algae do not compete with cor-
als for space and resources (Burkepile & Hay,
2010; Hixon & Bronstoff, 1996; Hughes et al.,
2017; Humphries et al., 2014). Invertebrate-
eating fish protect the colonies from corallivo-
rous invertebrates, and predatory piscivorous
fish maintain healthy balances of reef species
by controlling the populations of coral preda-
tors and bio-eroding herbivores (Hixon, 1997).
One of the most important contributing
factors to supporting cryptofauna is the health
of the coral itself. Live corals have greater
diversity and abundance of fish than dead
corals (Bell & Galzin, 1984). Bleached cor-
als have less abundance and fewer species of
cryptic fauna than healthy corals (Tsuchiya,
1999). On dead coral, there is an initial increase
in biodiversity as boring invertebrates colo-
nize the exposed carbonate skeleton, which
is unprotected by the coral’s stinging polyps
(Enochs, 2012). This diversity is not sustained,
however, as eventually the skeleton is eroded,
and with it, the structural complexity sustains
the biodiversity of a living coral reef (Enochs
& Manzello, 2012a).
Coral restoration is essential to the facili-
tation and acceleration of natural successional
processes through the reintroduction and man-
agement of key species (Horoszowski-Fridman
& Rinkevich, 2017; Horoszowski-Fridman et
al., 2015; Walker, et al., 2007; Young, 2001).
Thus, the best sites for coral reef restoration are
those sites where corals previously flourished
but where they are unlikely to settle and grow
under the current conditions (Rinkevich, 2005).
Likewise, the best candidates for species to
be transplanted are those that might not colo-
nize the restoration area unassisted (Society
for Ecological Restoration International Sci-
ence & Policy Working Group [SER], 2004).
Pocillopora coral is a good candidate for reef
restoration in that their branched skeletons
create conditions that allow other organisms
to colonize an area where they previously
lacked habitat (Clark & Edwards, 1994; Dar-
ling et al., 2012).
Except for a survey of coral borers (Fon-
seca & Cortés, 1998), no published survey
information exists that describes the species
of cryptic fauna associated with Pocillopora
in Golfo Dulce. However, the coral-associ-
ated fauna expected to be present can be
predicted from surveys conducted in other
reefs in the Eastern Tropical Pacific (ETP)
including Bahía Culebra, Costa Rica (Alvarado
& Vargas-Castillo, 2012; Salas-Moya et al.,
2021), Uva Island in Panama (Abele & Pat-
ton, 1976; Glynn, 1980; Glynn, 2013; Gotelli
& Abele, 1983; Gotelli et al., 1985), and the
Pacific coast of Mexico (Hernández et al.,
2009; Hernández et al., 2013). The species
composition of ichthyofauna of Golfo Dulce
is similar to but statistically different from that
of the rest of the Pacific coast of Costa Rica
(Alvarado et al., 2014).
The timing of recruitment of the associated
fauna onto a coral colony appears to also be of
importance for the reefs survival and health.
For example, it is known that some cryptic
fauna is recruited to corals quickly and begin to
reduce the effects of sedimentation and provide
protection from predation (Glynn, 2013; Stew-
art et al., 2006). This is particularly important
for juvenile corals compared to larger, more
mature corals (Toh et al., 2014). In laboratory
settings, juvenile host corals have higher sur-
vival rates when colonized with juvenile Trape-
zia crabs, which offer the host coral protection
from predation (Rouzé et al., 2014). However,
it is not known when and in what order cryptic
fauna are recruited in coral transplants.
Although non-coral animals such as fish
and invertebrates make up the majority of a
reefs biomass and diversity (Cortés et al.,
2017; Stella et al., 2011), most studies address-
ing the success of a restoration effort focus on
the growth and survival of the corals them-
selves (Ladd et al., 2019; Stella et al., 2011).
While the corals are critical to forming the
basic structure of coral reefs that allows them
to harbor such great biodiversity, the effect of
reef restoration on the community structure of
coral-associated animals is relatively under-
studied by comparison. Most of the available
4Revista de Biología Tropical, ISSN: 2215-2075 Vol. 71 (S1): e54882, abril 2023 (Publicado Abr. 30, 2023)
literature on the succession of fish following
restoration efforts focuses on non-living arti-
ficial reefs (Becker et al., 2017; Russell, 1975;
Santos et al., 2011). Similarly, studies concern-
ing the succession or community structure of
cryptic fauna on reefs have used non-coral
substrates (Breitburg, 1985) or the collec-
tion and destruction of coral colonies (Enochs
& Hockensmith, 2008; Enochs & Manzello,
2012b; Enochs et al., 2011).
Given the importance of reef-associated
animals to the health and survival of the coral,
the ecosystem services provided by the asso-
ciates, and the wide-ranging impacts of reef
communities on the ecology of the oceans,
more research on the effects of reef restoration
and rehabilitation on coral-associated animals
is essential. Ecological restoration and reha-
bilitation are considered to be successful when
they can regain the full complement of native
species and recuperate ecological processes
essential for the long-term persistence and self-
sustainability of the reef (SER, 2004; Walker
et al., 2007).
To understand the processes of the suc-
cession of the cryptofauna and fishes in a
coral reef of the ETP, this project aims to: 1)
Describe the community of cryptofauna living
in the coral transplants; 2) monitor changes in
the community of cryptofauna in Pocillopora
colonies in the 8 months following transplan-
tation; and 3) explore changes in the reef fish
community following transplantation.
MATERIALS AND METHODS
Golfo Dulce is a narrow-mouthed embay-
ment (8° 27’–8° 45’ N, 83° 07’–83° 30’ W)
oriented northwest to southeast between the
Osa Peninsula and the southern Pacific coast of
Costa Rica (Fig. 1). The Gulf has an approxi-
mate length of 50 km and width between 10
Fig. 1. Location of Golfo Dulce within Costa Rica: Punta Bejuco (transplantation site) is marked with a red star and Nicuesa
(coral nursery), is marked with a red asterisk. The red triangle in the top-right quadrant marks the meteorological station.
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and 15 km, and covers an area of 680 km2
with a maximum depth of 200 m. The average
yearly rainfall in Golfo Dulce is 4 000 to 5 000
mm and temperatures range from 18 ºC to 35
ºC with an average of approximately 26.5 ºC.
The dry season lasts from December to March
with an average rainfall of 100 to 160 mm per
month. The wet season peaks in October with
an average monthly rainfall of 800 mm (Cortés,
1990; Quesada-Alpízar & Cortés, 2006). For
this study, data collection months were grouped
by “seasons” that roughly correspond to sea-
sonal ranges in Golfo Dulce as described by
Cortés (1990). The “Wet” season includes Sep-
tember, October, November, & December, the
“Dry” season includes January, February, and
March, and the “Transition” season includes
April, May, June, July, & August. During the
period of this study (July 2019 – June 2020),
there was a total rainfall of 3 687 mm based on
meteorological data from the Fundación Neo-
trópica station of the Instituto Meteorológico
Nacional, near Golfo Dulce (08º 42’ 02.9” N,
83º 30’ 49.4” W, at 80 m above sea level) (Fig.
2). The area-averaged daytime sea surface tem-
peratures during the study period ranged from
29.3 ºC in October to 31.4 ºC in February based
on the NASA GIOVANNI satellite (Fig. 3).
Timeframe: The experiment took place
between July 2019 and February 2020. Twelve
months of data collection were planned, but
due to the COVID-19 global pandemic, field
trips were terminated in February 2020, result-
ing in eight months of data.
Geographically and ecologically, Golfo
Dulce is part of the ETP marine biologi-
cal province (Glynn et al., 2017). It is often
referred to as a tropical fjord due to its anoxic
deep waters and bathymetry (Cortés, 1990;
Hebbeln & Cortés, 2001; Wolff et al., 1996).
The anoxic waters prevent the energy contained
in detritus that sinks to the depth of the gulf to
Fig. 3. Area-averaged daytime sea surface temperatures (ºC) from the northern tip of Golfo Dulce from July 2018 to July
2020. The timeframe of the experiment is shaded in gray. Data from the NASA GIOVANNI satellite.
Fig. 2. Rainfall (mm month-1) data from the Instituto
Meteorológico Nacional de Costa Rica, near Golfo Dulce
(08º42’03”N, 83º30’49”W, at 80 m above sea level). The
gray shaded area represents the timeframe of the study.
6Revista de Biología Tropical, ISSN: 2215-2075 Vol. 71 (S1): e54882, abril 2023 (Publicado Abr. 30, 2023)
be recycled back into higher trophic levels of
the ecosystem (Wolff et al., 1996).
Experimental coral colonies: Thirty
Pocillopora damicornis (Linnaeus, 1758) and
Porites evermannii Vaughan, 1907 colonies
were selected at random from a crop of colonies
grown in the coral tree nurseries in Nicuesa,
Costa Rica (Fig. 1). These nurseries form part
of a restoration initiative that started in 2016
as a project of the non-governmental organiza-
tion Raising Coral Costa Rica and the Center
for Research in Marine Science and Limnol-
ogy (CIMAR) of the University of Costa Rica
(UCR) (Kleypas et al., 2021; Villalobos, 2019).
The two species were not distinguished for this
study and are referred to as “Pocillopora” for
the rest of this article.
Transplantation site: Punta Bejuco reef
(8° 43’ 39” N, 83° 24’ 30” W) (Fig. 1) was
selected as the transplantation site for the Pocil-
lopora colonies. Punta Bejuco consists of three
reefs with steeply sloping edges separated by
channels of sand. The reef substrates are mostly
made up of dead Pocillopora and Psammocora
rubble. The live coral species Porites lobata
Dana, 1846 and P. evermanni are predominant
in this site (Boulay et al., 2014; Cortés, 1990).
No live colonies of Pocillopora have pres-
ently been encountered in Punta Bejuco, but
the presence of live Pocillopora in the past can
be inferred from coral skeletons (Cortés, 1990).
Pocillopora corals have low rates of natural
recruitment in Golfo Dulce (Villalobos, 2019),
and small colonies are more likely to die as a
result of predation (Toh et al., 2014) and com-
petition with algae (Kuffner et al., 2006).
Out-planting of nursery-grown Pocil-
lopora colonies and experimental design:
The colonies were anchored with nylon zip-
ties to steel nails, and driven into the calcium
carbonate substrate in a six by five rectangular
arrangement of the colonies with a distance
of 30 cm from neighboring colonies. The
rectangular transect extended 15 cm from the
centroids of the fringing nails to measure 1.5
by 1.8 m in total (Fig. 4). To understand how
the presence of the transplanted coral affects
the fish and benthic invertebrate communities
and the sea floor cover, a control transect was
designated and monitored using the same meth-
ods as the transplantation site, e.g., with 30
steel nails but devoid of Pocillopora outplants
(Fig. 4). The control transect is located at Punta
Bejuco at the same depth as the transplant area
in a relatively flat region with a (visually) simi-
lar substrate composition.
Monitoring of cryptic fauna: In the
transplanted transect, the cryptofauna in each
colony were identified and counted by visual
census every month. The observer identified
and recorded all of the visible cryptofauna
occupying the space between the branches or
on the surface of each colony. The observer
positioned themselves about 3 to 10 cm from
each colony and viewed it from every angle
to ensure that they recorded all cryptofauna
therein before moving to the next colony. Most
methods used to investigate the cryptofauna
living between the branches of corals require
the corals to be removed from the study site
and destroyed (Abele & Patton, 1976; Alvarado
& Vargas-Castillo, 2012; Enochs & Hock-
ensmith, 2008; Enochs & Manzello, 2012a;
Enochs & Manzello, 2012b; Stella et al., 2010).
In situ visual identification provides a low-cost,
non-destructive method for the quantification
of the cryptic community over time, although
it is not as effective as a destructive collec-
tion in the identification of very small and
burrowing cryptic species (Alzate et al., 2014;
Caldwell et al., 2016) which were not the focus
of this study.
Monitoring of ichthyofauna communi-
ties in transplanted and control transects:
To identify and count the reef-associated fish
in either patch, each month a diver observed
ichthyofauna from a fixed position approxi-
mately 2 m away from the deepest border of the
out-planted transect and the control transect.
For 10 minutes on each experimental patch,
the observer identified and counted fish within
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an imaginary rectangular prism extending the
length and width of each transect and 3 m
above the sea floor (Fig. 5). The icthyofauna
communities associated with the Pocillopora
outplants and control transect were summa-
rized by three measurements: Shannon-Weiner
diversity index (H’ = -Σpi * ln(pi)), total abun-
dance of fish, and the specific abundance of
each species.
Data analysis
Cryptofaunal community: The diver-
sity and abundance of cryptic organisms are
described in terms of operational taxonomic
units (OTUs) instead of species according
to Enochs & Manzello (2012b), to prevent
overestimation. The cryptic faunal community
associated with the Pocillopora outplants is
summarized in terms of the number of OTUs,
the total abundance of cryptic organisms, and
the specific abundance of each OTU in each
colony and within the experimental patch as
a whole. The diversity of the cryptofauna was
defined as the number of unique OTUs present
in each colony.
Generalized linear models (GLMs) in
Poisson distribution were used to identify
trends in both abundance and diversity over
time in the eight months following transplanta-
tion. To explore changes in the cryptofaunal
community living between the branches of the
transplanted Pocillopora colonies, the similar-
ity of community composition in terms of the
presence and abundance of cryptofauna OTUs
between and across months and seasons (dry,
transition, and rainy) was quantified with clus-
ter analysis performed in PRIMER 7 (Clarke
& Gorley, 2015). First, the average abundance
of each cryptic species each month was square
root transformed to enhance the impact of less
common OTUs and to diminish that of the
Fig. 4. The arrangement of experimental colonies and nails within transects on the sea floor. The black dots represent nails
used as attachment points for the colonies (left) or as controls (right). The circles represent Pocillopora colonies. The dotted
line represents the edge of the experimental and control patches. Each colony or nail position is given a procedural name
so that it can be easily located.
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most common OTUs. The transformed data
were then used to build a Bray-Curtis similarity
matrix (Clarke & Gorley, 2015). This similarity
matrix was used to represent the similarity of
the cryptic community each month in two (2)
dimensions using non-metric multidimensional
scaling (nMDS) (Clarke & Gorley, 2015) and
to build a dendrogram showing the similarity
of the cryptic community of the transplanted
colonies between sample months. Additionally,
the data were used to generate a heat plot that
displays the contribution of each OTU to the
cryptic community each month.
To test for significant differences in the
cryptic community between seasonal groupings
of months in terms of the average abundance of
OTUs, an analysis of similarity (ANOSIM)
was conducted using the Bray-Curtis similarity
matrix. To determine which OTUs contributed
most to any dissimilarity in the cryptofau-
nal community amongst groupings, similarity
percentage analysis (SIMPER) was conduct-
ed using the Bray-Curtis similarity matrix in
PRIMER 7 (Clarke & Gorley, 2015).
Ichthyofaunal community: Student’s
t-tests were performed in R to detect differenc-
es between the experimental and control tran-
sects in the abundance (number of individuals
per patch) and Shannon-Weiner diversity index
(H’) of the ichthyofauna over the eight months
of data collection. The ordination method of
nMDS was performed in PRIMER 7 (Clarke &
Gorley, 2015) to explore differences in the reef
fish community between the experimental and
control patches. The abundances of fish spe-
cies each month were square root transformed
to enhance the impact of less common species
and to diminish that of the most common spe-
cies. The transformed data were then used to
build a Bray-Curtis similarity matrix (Clarke
& Gorley, 2015). This similarity matrix was
used to represent the similarity of the fish com-
munity each month in two dimensions using
non-metric multidimensional scaling (nMDS)
(Clarke & Gorley, 2015). Differences in the
reef fish community between experimental and
control patches were explored with ANOSIM
and SIMPER tests in PRIMER 7(Clarke &
Gorley, 2015).
RESULTS
Description of the cryptofaunal commu-
nity: Over the eight months of the study, a total
of 17 OTUs of cryptofauna were identified
and counted (Table 1). These OTUs were split
into four categories based on their taxonomy
and ecological role in the reef ecosystem: (1)
Fig. 5. Method for counting coral-associated fish at the experimental and control sites.
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decapod crustaceans, (2) cryptic fish that per-
manently occupied the spaces between the
coral branches, (3) reef fish that are usually
encountered in the water column around corals,
and (4) encrusting animals attached to the coral
transplants. The decapod crustaceans included
Trapezia spp., Alpheus lottini, Harpiliopsis
depressa, Palaemonella holmesi, Palaemon rit-
teri, the family Paguridae, and the superfamily
Majoidea. All of the cryptic fish were within
the order Blenniiformes, and included Axo-
clinus lucilae, Acanthemblemaria exilispinus,
Elacatinus punticulatus, Plagiotremus azaleus,
and individuals that were not identified at the
species level within the family Tripterygiidae.
Reef fish included Abudefduf troschelli, Scarus
spp., Stegastes acapulcoensis, and fish within
the family Chaetodontidae. The encrusting
metazoan group included polychaetes within
the family Sabellidae, ascidians, gastropods
within the family Vermetidae, and bivalves
within the genus Spondylus.
Patterns in the community of cryp-
tofauna in Pocillopora colonies following
transplantation: The dominant cryptofauna
throughout the experiment were symbiont
decapods in the OTUs Trapezia spp., Harpili-
opsis depressa, and Alpheus lottini. They com-
prised on average 81 % (43 %, 30 %, and 18
% respectively) of the fauna identified within
the 30 colonies over the eight months of moni-
toring (Table 1). The rest of the cryptofauna
identified within the colonies were cryptic
fish, transient fish, and encrusting metazoans,
accounting for 19 % of the associated fauna
found between the branches of the Pocillopora
transplants.
TABLE 1
Counts and percentages of cryptofauna OTUs identified within the transplanted corals each month following transplantation
at Punta Bejuco, Golfo Dulce.
Group O T U (symbol) Jul19 Aug19 Sep19 Oct19 Nov19 Dec19 Jan20 Feb20
n % n % n % n % n % n % n % n %
Decapod Trapezia spp.* (tra) 168 54.7 117 50.9 153 45.0 128 30.8 153 49.7 181 51.9 252 37.9 250 38.9
Decapod Harpiliopsis depressa* (hde) 103 33.6 73 31.7 83 24.4 183 44.0 79 25.6 50 14.3 238 35.8 157 24.4
Decapod Alpheus lottini * (alo) 24 7.8 38 16.5 90 26.5 89 21.4 46 14.9 102 29.2 119 17.9 91 14.2
Encruster Spondylus sp. (spo) 8 2.6
Decapod Palaemonella holmesi (pho) 4 1.3 46 7.2
Decapod Majoidea (maj) 2 0.9
Cryptic fish Blenniiformes (blenny) 4 1.2 4 1.0 18 2.7 2 0.3
Decapod Paguridae (pagu) 4 1.2 8 1.9 10 3.2 4 1.1 10 1.5 8 1.2
Encruster Vermetidae (verm) 2 0.6 2 0.5 10 3.2 4 1.1 2 0.3
Encruster Ascidea (asci) 2 0.5 2 0.6 6 1.7
Encruster Sabellidae (sab) 8 2.6 2 0.6
Reef fish Scarus spp. (scar) 24 3.6 27 4.2
Reef fish Stegastes acapulcoensis (sac) 4 0.6 8 1.2
Decapod Palemon ritteri (pri) 42 6.5
Reef fish Chaetodontidae (chaet) 8 1.2
Reef fish Abudefduf troschelli (atr) 2 0.3
TOTAL Abundance 307 100 230 100 340 100 416 100 308 100 349 100 665 100 643 100
Total OTUs 546777712
Symbols in parentheses are used in Fig. 8. Asterisks (*) indicate OTUs that are obligate symbionts of Pocillopora spp. OTUs
are arranged by order of first observ ation and percent contribution to the cryptofaunal community each month.