Revista de Biología Tropical / International Journal of Tropical Biology and Conservation, es una revista de acceso abierto completo de la Universidad de Costa Rica centrada en la biología tropical y la conservación. Todos los números, desde 1953 hasta la actualidad, están disponibles para su descarga gratuita. aquí. NUESTRO ENFOQUE (Objetivo) Nuestra revista publica artículos científicos que aumentan nuestra comprensión de la biología, la conservación y las ciencias biomédicas de la vida en los trópicos. Los criterios de selección son la cantidad y calidad de la nueva información y su interés potencial tanto para el público en general como para los especialistas. Los ecosistemas estudiados, o al menos los organismos, deben ser tropicales. COBERTURA TEMÁTICA Números regulares Damos preferencia a artículos de fondo que incluyen preguntas de estudio comprobables, por ejemplo, estudios con un diseño experimental que evalúe factores que influyen en variables biológicas, o estudios que explican los mecanismos subyacentes a fenómenos biológicos o biomédicos como, por ejemplo, el comportamiento o la fisiología. Los estudios de campo deben presentar patrones temporales o espaciales. También damos la bienvenida a estudios sistemáticos o filogenéticos por encima del nivel de especies, metanálisis y estudios bibliométricos que examinan críticamente lo que se conoce y lo que queda por hacer en cualquier campo de la biología tropical. Los artículos de revisión se publican en su mayoría por invitación del Consejo Editorial a autoridades reconocidas. Otros especialistas interesados en enviar una revisión primero deben enviar un esquema de manuscrito titulado al correo biologia.tropical@ucr.ac.cr. Las propuestas aceptadas reciben la misma evaluación que los manuscritos regulares. Todas las revisiones y metanálisis deben identificar y llenar los vacíos en el conocimiento, presentar avances metodológicos y proponer futuras direcciones de investigación. Nota sobre datos antiguos: Si su trabajo se basa en datos antiguos, recomendamos compararlos con datos más recientes, o usarlos como parte de meta-análisis, para darles mayor valor. Los estudios basados en datos recopilados hace más de seis años deben incluir una justificación de por qué siguen siendo de interés y, en el caso de estudios de campo, deben presentar patrones espaciales o tendencias temporales de importancia histórica. El Comité Editorial evalúa la validez de los métodos y la relevancia de los resultados antes de enviar el manuscrito a revisión. La revista ahora cuenta con un número al año (publicación continua del 1 de enero al 31 de diciembre) y publica los artículos la misma semana en la que se tiene disponible una versión editada. Hasta 2021 publico cuatro números regulares por año: número 1 (enero-marzo), número 2 (abril-junio), número 3 (julio-septiembre) y número 4 (octubre-diciembre). No publicamos notas; comunicaciones cortas; listas de especies; nueva especie única; extensiones de rango; nuevos registros y otros estudios preliminares o breves; o informes técnicos altamente especializados basados en protocolos (por ejemplo, estudios agrícolas, forestales, bioquímicos, microbiológicos, acuícolas, pesqueros o similares que solo aplican técnicas bien conocidas a casos particulares de interés local). NÚMEROS ESPECIALES Los números especiales financiados por organizaciones de investigación se aceptan después de la aprobación del Comité Editorial. Pueden contener una diversidad de tipos de informes, incluidos artículos breves, nuevos registros, nuevas descripciones de especies, listas de verificación, informes técnicos, etc. Para publicar un número especial, comuníquese con biologia.tropical@ucr.ac.cr para obtener una estimación de costos. PÚBLICO META Personas investigadoras con interés en el estudio de todos los campos de la biología tropical. PORQUÉ PUBLICAR EN LA REVISTA DE BIOLOGÍA TROPICAL? Totalmente indexada: Revista de Biología Tropical está incluida en Science Citation Index Expanded, REDIB Journals Ranking, Current Contents, Google Scholar, Biological Abstracts y alrededor de 50 otros índices internacionales. Rápida decisión y publicación (7 días para la primera decisión, 5-7 meses para aceptación definitiva, 6-8 meses desde el envío hasta la publicación). Razonable: utilizamos un sistema de doble ciego para una evaluación justa de los manuscritos. Alto impacto, no solo por su índice de citas, sino también porque es muy leído en países con la mayor biodiversidad tropical, lo que garantiza que su artículo tendrá el mayor impacto en la conservación de la biodiversidad tropical. Factor de impacto de Web of Science de 0.6. Factor de impacto en SJR de 0.28 (Q2). Un trato personalizado por parte de nuestro dedicado personal. Juntas editoriales y científicas de clase mundial. Acceso abierto: Todos los artículos, desde el primer número en 1953 hasta el presente, están disponibles gratuitamente en línea (Archivos), por lo que es más probable que sean citados que los artículos detrás de muros de pago. PUBLICACIÓN GRATUITA: Cada artículo recibe 10 páginas de espacio libre en formato PDF, que es suficiente para la mayoría de los artículos científicos. Se pueden publicar páginas adicionales diagramadas en el pdf a $50 cada una. Material complementario como textos adicionales, figuras, tablas, gráficos y bases de datos con un costo de $60. Póngase en contacto con biologia.tropical@ucr.ac.cr para obtener más información. OAI-PMH: https://revistas.ucr.ac.cr/index.php/RBT/oai
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Pigmentation abnormality in the blotched round ray Urotrygon asterias (Myliobatiformes: Urotrygonidae): first case of partial xanthism within the family
Introduction: Malpigmentation or pigment disorders can result from either a deficiency or an excess of pigments and have been reported in a wide variety of fish taxa. Color abnormalities are rare among elasmobranchs. Among nearly 1 250 known species, only 22 cases of malpigmentations as albinism and leucism, have been reported, most involving sharks and rarely batoids. Xanthochromism is a rare pigmentation disorder characterized by a yellow-orange coloration caused by multiple factors. This condition has been scarcely reported in elasmobranchs, with only seven known cases, five of them in batoids. Objectives: Here, we present the first record of xanthochromism in the blotched round ray Urotrygon asterias, and the first within the family Urotrygonidae. Methods: One juvenile specimen was captured two times during a monitoring program at Playa Manzanillo, El Jobo, Guanacaste, Costa Rica, and photographic identification confirmed it was the same individual. Additionally, morphometric measurements of the individual were taken to assess whether it had grown. Results: The recapture of this specimen indicates that xanthochromism does not necessarily compromise short-term survival. Potential causes of the condition include genetic mutations, diet, gestation disorders, or environmental factors, such as contamination. Playa Manzanillo exhibits evidence of anthropogenic impacts, including fishing waste and pollutants, which may influence local ichthyofauna health. Conclusions: This finding expands the understanding of pigmentation anomalies in batoids and highlights the need for further research to assess the environmental drivers of morphological abnormalities, including pigmentation, in elasmobranchs. Such studies are crucial for evaluating the ecological and conservation implications of these disorders in the Ester Tropical Pacific.
malpigmentación; aberración cromática; raya redonda; Centroamérica; anomalía xantocrómica.
Copyright (c) 2026 Revista de Biología Tropical https://creativecommons.org/licenses/by/4.0
Satellite and historical data, and statistical modeling to predict potential fishing zones for dolphinfish, Coryphaena hippurus (Perciformes: Coryphaenidae) in Colombian Pacific
Introduction: The prediction of potential fishing areas is considered one of the most immediate and practical approaches in fisheries and is an essential technique for decision-making in managing fishery resources. It helps fishermen reduce their fuel costs and the uncertainty of their fish catches; this technique allows to contribute to national and international food security. In this study, we build different combinations of predictive statistical models such as Generalized Linear Models and Generalized Additive Models. Objective: To predict the spatial distribution of PFZs of the dolphinfish (Coryphaena hippurus L.) in the Colombian Pacific Ocean. Methods: We built different combinations of Generalized Linear Models and Generalized Additive Models to predict the Catch Per Unit Effort of C. hippurus captured from 2002 to 2015 as a function of sea surface temperature, chlorophyll-a concentration, sea level anomaly, and bathymetry. Results: A Generalized Additive Model with Gaussian error distribution obtained the best performance for predicting PFZs for C. hipurus. Model validation was performed by calculating the Root Mean Square Error through a cross-validation approach. The R2 of this model was 50 %, which was considered suitable for the type of data used. January and March were the months with the highest Catch per Unit Effort values, while November and December showed the lower values. Conclusion: The predicted PFZs of C. hippurus with Generalized Additive Models satisfactorily with the results of previous research, suggesting that our model can be explored as a tool for the assessment, decision making, and sustainable use of this species in the Colombian Pacific Ocean.
Copyright (c) 2022 Revista de Biología Tropical http://creativecommons.org/licenses/by/4.0
Natural revegetation of areas impacted by gold mining in the tropical rain forest of Chocó, Colombia
Introduction: Ecological restoration is a strategy that allows recovering goods and services in disturbed ecosystems. One of the activities that generates greatest impact on forest ecosystems is open pit mining, as it causes strong changes in the structure and functioning of these systems. Objective: The aims of this work was to evaluate the effect of successional age and distance to the adjacent forest (reference forest) on the biological structure and composition of the plant community in abandoned gold mines in the tropical rain forest of Chocó in Colombia. Methods: Between June and December 2012, and June and October 2021, vegetation sampling was carried out in mines with 6, 10, 15, 19 and 24 years of abandonment and in the reference forest. In each mine of different ages and the reference forest, four 2×50 m plots were established and distributed perpendicularly to the edge of the forest, at 50 m and 100 m distance (two plots per distance) taking as a starting point split the forest-mine edge (ecotone). Results: 300 species, 193 genera and 75 families were identified. The richness, diversity, and evenness changes little with the time of abandonment in the mines but reaches higher values in the reference forest. Species composition is similar between mines but differs substantially from the reference forest (only 7% similarity). Conclusions: The results suggest that 24 years is a short time to appreciate a substantial recovery of the biological structure and composition of the vegetation in mines if it is compared with the reference forest where the richness, diversity, evenness are higher and the composition of species differs substantially. Although the distance to the adjacent forest seems to have no effect on these variables, it is clear that other factors such as the quality of the substrate and the reproductive strategies of some herbaceous species of the families Cyperaceae and Melastomataceae, as well as some trees such as Cespedesia spathulata and Miconia reducens, they play an important role in the early natural revegetation of abandoned mines in the pluvial forests of the Colombian biogeographical Chocó.
Distribution, diversity, endemism, and ecology of Nymphalid butterflies (Lepidoptera: Nymphalidae) in the Loxicha Region, Oaxaca, Mexico
Introduction: An economic activity that has boomed in the last decade in Colombian highlands is the afforestation of anthropized savannas, but its role in the conservation of fruit-feeding butterflies of gallery forests within forest cores is unknown. Objective: To compare the diversity of fruit-feeding butterflies in eucalyptus plantations and gallery forests, and the role of environmental variables. Methods: We used Van Someren-Rydon traps, two replicates of four traps, on each of four habitats sampled simultaneously from December 2020 to July 2021: four-year-old eucalyptus plantation; six-year-old eucalyptus plantation; dry soil gallery forest and waterlogged gallery forest. We also recorded ten abiotic, structural, food and habitat variables. Results: We collected 227 specimens of fruit-feeding butterflies (30 species, 23 genera, and 5 subfamilies within the family Nymphalidae). There were more species in the forests. The butterfly species varied over 50 % between the habitats; Satyrinae were more diverse in plantations. Conclusion: Afforestation in this area provides habitats for some species of fruit-feeding butterflies from adjacent natural forest remnants. Afforestations represent an intermediate disturbance scenario between the two dominant landscape units in the region.
Bioindicator, Biodiversity, Afforestation, Colombian Altillanura, land use change.
Pheno-morphology of two paramo species of Miconia (Melastomataceae): optimization of flowering and fructification to enhance dispersal
Introduction: Paramos are among the ecosystems that are most affected by anthropic activities, increasing the need for phenological studies as a basis for management and conservation. Objective: To describe the pheno-morphology of Miconia ligustrina and Miconia elaeoides. Methods: From September 2019 to February 2020, and from April 2021 to August of the same year, the phenology of 12 individuals of each species was monitored. Additionally, phenological data of herbariums were linked to corroborate obtained results. In the two data sets, distribution of data was described using circular statistics; in addition, we recorded the precipitation and temperature in the area. Additionally, we described the morphometry of each species. Results: The flowering peak of M. ligustrina is in April, and fruiting concentrates between June and July; in M. elaeoides, flowering is massive in January, and the highest fruit production in May. The phenology was correlated with rainfall: flowering takes place in the dry season and fruiting in the rainy season. The species differ morphologically, but, as in other Miconia species, the flowers and fruits are small (approx. 5 mm). Conclusions: Flowering occurs in the dry season and fructification in the rainy season, when the photosynthetic rate is low and frugivory increases. This phenological pattern favors optimal seed dispersal.
Adaptation to the undergrowth of a community of Andean palms (Arecaceae) from the vital rates perspective
Introduction: Palms have adaptations to thrive in the limiting environment of the understory, which can be examined from studying their survival, growth and fecundity rates. However, studies that address the vital rates strategies developed by a community of palms to successfully inhabit the forest understory are scarce. Objective: To determine and compare the vital rates of survival, growth and fecundity in a community of Andean understory palms. Methods: The study was carried out in the Chicaque Natural Park, Colombia in an area occupying 0.07 ha, focused on the species Chamaedorea linearis, C. pinnatifrons, Geonoma orbignyana and G. undata. During 2018 and 2019, data corresponding to survival, growth and fecundity of these species were collected. The vital rates were estimated from their relationship with the size of the individuals. Results: A total of 597, 687, 453 and 690 individuals were registered in 0.1 ha of C. linearis, C. pinnatifrons, G. orbignyana and G. undata, respectively. The four species had high survival of seedlings, low growth rates in stemless individuals, low leaf production, few total leaves, a high longevity of the leaves and start of reproduction with low-height aerial stem. However, we found differences among species in which G. orbignyana and C. pinnatifrons demonstrated patterns commonly seen in understory palms. By contrast, C. linearis and G. undata had mixed growth strategies to cope with open spaces and understory conditions, as their leaves are larger, have larger stem growth rates and reproduction begins at a higher height. In terms of the genera, Chamaedoreas had fast growth and reproduction rates, spending most of their lives as adults. Meanwhile, Geonomas prioritizes the stasis of individuals, with its long-life cycles and lower growth rates. Conclusions: Chamaedoreas prioritizes growth and reproduction, while Geonomas prioritizes stasis. The limiting conditions of the understory seem to favor these two growth strategies in the species. These results can be considered as a step towards better understanding the strategies of a community of palms in the understory.
Basic ecology of ant gardens in a dry-premontane transitional forest
Introduction: Ant gardens are ant nests located at different heights on trees on which vascular epiphytic plants that have been transported and sown by ants have germinated. Although this mutualistic relationship has been studied in humid tropical ecosystems, information on other tropical and Colombian ecosystems is scarce. Objective: To characterize the spatial distribution, formation process, diversity, demography, and phenology of Ant gardens in a secondary dry premontane transitional forest in Colombia. Methods: We estimated the spatial distribution and formation process of ant gardens. Phenological and demographic monitoring of epiphytes plants of ant gardens was performed. The monitoring of the ant gardens was done in transects, every 15 days. Results: The ant gardens showed an aggregated distribution pattern relative to water bodies. The garden-forming ant species was identified as Azteca ulei. Ten species of epiphytes plants and 13 species of phorophytes trees related to ant gardens were identified. The behavior of A. ulei favored the formation and maintenance of the ant gardens. A positive relationship was found between epiphyte richness and ant garden size. Some epiphytes presented a bimodal phenological pattern. The demographic pattern of epiphytes suggests that in the dry season, the number of established seedlings is reduced, which reduces the number of adults that remain in ant gardens. Conclusions: Ant gardens are the microhabitat that allows the germination, establishment, and reproduction of diverse epiphytes in the studied dry-premontane transitional forest.
Azteca ulei, dry forest, epiphytes, plant-animal interaction, premontane forest.
Diversity and genetic structure of natural populations of the palm tree Euterpe precatoria (Arecaceae)
Introduction: The natural ecosystems of northern Mato Grosso, Brazil, are in process of fragmentation, mainly due to population growth and the expansion of agriculture. This endangers the palm Euterpe precatoria (locally known as açaí), used for construction, palm hearts, juices and ice cream. Objective: To evaluate the local diversity and genetic structure in native populations of E. precatoria. Methods: We collected leaves from 106 fruiting palms from five populations in Mato Grosso State, for analysis of microsatellite markers with Polymerase Chain Reaction. Results: The five SSR loci revealed a total of 30 alleles, ranging from 5 (EE23 and EE43) to 7 (EE2 and EE15), with an average of 6 alleles per locus. The mean PIC was 0.74 and confirmed low heterozygosity and inbreeding. The UPGMA dendrogram produced two groups and molecular variance revealed greater genetic differentiation within populations. The high levels of homozygous microsatellite loci indicate low genetic diversity. Conclusions: These populations have low gene diversity, high average number of alleles per locus, and rare and exclusive alleles. We recommend the establishment of permanent conservation units with corridors among them.
First use of baited remote underwater video stations to assess fish diversity in the Metropolitan Region of Recife, Northeastern Brazil
Introduction: Video techniques are used worldwide to study marine communities. As elsewhere, the use of remote underwater videos has recently increased in Brazil and there is a need for information about their advantages, disadvantages, and reliability in tropical habitats. Objective: To evaluate the use of baited remote underwater video stations (BRUVS) in fish diversity research in a tropical habitat. Methods: We used baited video stations to record the fishes and their relationship with habitat type, underwater visibility and depth, in 79 random sites in the Metropolitan Region of Recife, Northeastern Brazil (11 days in November 2017). Results: We recorded 3 286 individuals (65 taxa, 29 families) along a 25 km section of the shoreline, 10.2 to 28.6 m depth. The Clupeidae dominated numerically, followed by Haemulidae, Carangidae, and Lutjanidae; by species, Haemulon aurolineatum, Ophistonema oglinum, Haemulon steindachneri, Lutjanus synagris and Caranx crysos. The highest mean number of species was detected over sediment close to shipwrecks, but we found no differences among the mean number of individuals between habitat types. More species and individuals were observed at a depth of 20-25 m depth. The highest mean number of species was in 2-3 m of visibility, and the highest number of individuals within 4-5 m. Conclusions: Video recording seemed to be a valid method, and indicated that —besides being relatively diverse— the local fish community is dominated by a few species of small and medium-sized mesopredators, and a few top predators.
Effect of fires on vegetation cover, carbon storage and plant biomass in a coastal wetland
Introduction: Wetlands are among the most productive ecosystems, but currently are being degraded or eliminated at accelerated rates by multiple anthropic activities. In the central coast of Peru, wetlands suffer recurring fires, and the little-studied effects include the level of emissions and carbon sequestration by burning. Objective: To estimate carbon in aerial biomass affected by fire, and carbon recovered by the vegetation after one year. Methods: We worked in Los Pantanos de Villa (Lima, Peru) coastal wetland and compared burnt (32 quadrants, 1 m2) and unaffected areas (33 quadrants). Results: The vegetation affected was predominantly herbaceous and dominated by Phragmites australis, Schoenoplectus americanus, Typha dominguensis and Cladium jamaicense. Fire affected 1 147.0 t of plant biomass that stored 381.8 t of carbon, generating the emission of 1 397.1 t of CO2 into the atmosphere. After one year, 79 % of the vegetation cover had recovered, but only 26 % of the plant biomass and 12.8 % of vegetation carbon. Conclusions: Appropriate indicators of wetland fire resilience should consider that fire-impacted wetland rapidly recovers plant cover, but not carbon storage and plant biomass.
Size does matter! Incidence of bait size on the capture of dung beetles in the tropical dry forest
Introduction: Typically, research on dung beetles in the Tropical Dry Forests (TDF) of Colombian Caribbean region, have applied methodologies designed for wet or Andean areas of the country, which could be influencing the performance and efficiency of sampling. Objective: In order to contribute to this discussion, we analyzed how the bait amount and pitfall trap operating time influence the collection effectiveness of dung beetles in a TDF fragment at Reserva Campesina La Flecha, San Jacinto, Colombia. Methods: For the collection of beetles, we utilized pitfall traps baited with three different amounts of attractants: small (34.6 g), medium (53.8 g), and large (114.9 g), which remained active in the field for 48 h., 4 samplings between March and September 2015 were carried out, covering both, dry and rainy seasons. Results: A total of 4 563 individuals were recorded, grouped into 10 genera and 27 species of dung beetles. The highest values of richness, abundance and biomass were registered in the large bait, at 48 h, during the rainy season. However, the trap operating time had no effect on the estimation of beetles’ richness, abundance, and biomass, regardless of bait sizes. The three diversity orders (0D, 1D y 2D) showed similar values between the bait amounts during rainy season, but in the dry season, the largest baits displayed the highest diversity values. On the other hand, with the largest bait, significantly more richness, abundance, and biomass of small and large body beetles were registered, especially during the dry season. Conclusions: The results of this research show that, for the study of beetles’ assemblages in the BST, the use of a larger bait contributes to a better estimate of richness, abundance, diversity and biomass, especially during the dry season, when environmental conditions promote a more rapidly loss of baits attractiveness.
Seagrass density correlates with burrow abundance and size in the Zebra Mantis Shrimp (Stomatopoda: Lysiosquillidae)
Introduction: Mantis shrimps are ecologically and economically important organisms in marine ecosystems. However, there is still a lack of information about their habitat, in particular, their burrows. Objective: To analyze how dense and sparse mantis shrimp burrows differ in abundance, size, sediment grain size, and water quality. Methods: We counted burrows in 10 x 10 m2 random plots in sparse and dense seagrass (ten plots per density), around Barrang Lompo Island, South Sulawesi, Indonesia. Sampling took place at spring low tide from August to September 2017. Results: Two mantis shrimp species were observed: Lysiosquillina maculate and L. sulcata. Dense and sparse seagrass burrows did not differ in wall grain size or water parameters, both inside and outside of the burrows (P > 0.05). Similarly, there was no correlation between burrow depth and diameter in either dense (P > 0.05; r= 0.27) or sparse (P > 0.05; r= 0.33) seagrass. However, larger burrows tend to occur in denser beds, but there were more burrows in denser seagrass (t-test, P < 0.05). Conclusions: There seems to be a preference for dense seagrass beds, especially by larger mantis shrimps. The correlation between shrimp burrow abundance and seagrass density highlights the importance of conserving the quality as well as the extent of seagrass habitat.
Wasting disease in Thalassia testudinum (Hydrocharitaceae) meadows and its relationship with metabolic profile
Introduction: Protists of the genus Labyrinthula cause the so-called “Wasting Disease” in seagrass, Thalassia testudinum. Monitoring in the Colombian Caribbean since 2008 has shown spatial and temporal variation in the disease’s incidence, but without the high mortality observed in other regions of the world. Objective: To analyze some epidemiological parameters in T. testudinum and to compare metabolites between healthy and infected plants. Methods: We recorded severity, incidence and prevalence of this disease in Tayrona National Natural Park and Providencia Island, and we analyze water and sediment samples. Additionally, we applied gas and liquid chromatography, coupled with mass spectrometry, to methanolic extracts from leaf and rhizome samples of healthy and infected shoots. Results: The meadows were in good condition, despite the scarce seagrass shoots in Tayrona and a high incidence (15 %) and severity (35.5 %) of the disease in Providencia. Infected plants had lower levels of phenols, flavonoids and sugars. Sulphated flavones with aglycone luteolin and diosmetin, sterols (sitosterol and stigmasterol) and volatile oxylipins are accumulated in leaves (3-hydroxy-2-isopentanone) and isopentaenoic and octadecatrienoic acids in rhizomes. Conclusions: These Colombian seagrasses have differential production of metabolites. Probably as a successful defense, even at low levels of severity (0.1 %) and incidence (1 %) of the disease.
Half a century of Sri Lanka research: Subjects, researchers, institutions, journals and impact (1973-2019)
Introduction: Bibliometric analyses of research in Sri Lanka, a lower-middle income island nation in South Asia, has focused mainly on medical research, concluding that there is a need for increased research productivity and impact, and for local solutions to health concerns. There has been no general bibliometric analysis across scientific disciplines in the nation, or any study that covers a long period of time to identify general time trends. Objective: To measure and analyse Sri Lankan research by focusing on subjects, authors, institutions, journals and citation for half a century. Methods: We used an advanced search method to extract publications with the word “Sri Lanka” in the SCI-EXPANDED, and calculated indicators such as total citations from Web of Science Core Collection since publication year to the end of 2019, citations in 2019, and mean citations per publication. Journal data were taken from 2019 Journal Citation Report. Affiliation re-classification was done to ensure consistency regarding the origin of all publications. Publications were further analysed based on collaboration, and first and corresponding authorship. Results: We retrieved 16 069 publications in 19 document types (77 % articles). Corrections had the highest number of authors per publication (616) followed by articles (116). Four articles had more than 5 000 authors and 593 articles had more than 1 000 authors. The highest citations in this database were for international megaprojects where Sri Lankan authors played minor roles. The UK had the most collaborative articles with Sri Lanka (19 %). The articles were published in 3 051 journals across 177 Web of Science categories. The category of Public, environmental and occupational health, with 193 journals, had 6.7 % of all articles, followed by environmental sciences (6.6 %). Conclusion: Sri Lanka has an unusually strong pattern of participating as small role players in international megaprojects about health and physics. Sri Lankan authors should be encouraged to expand their horizons by researching non-applied fields that are the basis of all innovation; to strengthen their own journals so that they have better visibility and impact, and to improve their positions in international projects that are published in larger journals.
Population genetics and molecular identification of Crocodylus acutus and C. moreletii (Crocodilia: Crocodylidae) in captive and wildlife populations
Introduction: There is low evidence of genetic diversity and hybridization processes within Crocodylus acutus and C. moreletii populations. Objetive: To evaluate genetic diversity and some phylogenetic relationships in wild and captive populations of C. acutus and C. moreletii using the Barcode of Life Data System (COX1, cytochrome C oxidase subunit 1 gene). Methods: 28 individuals phenotypically like C. acutus located in the state of Guerrero, Oaxaca and Quintana Roo were sampled, as well as animals belonging to C. moreletii located in the states of Tabasco, Campeche, and Quintana Roo. 641 base pairs of nucleotide sequence from COX1 were used to obtain the haplotype and nucleotide diversity per population, and a phylogenetic and network analysis was performed. Results: Evidence of hybridization was found by observing C. moreletti haplotypes in animals phenotypically determined as C. acutus, as well as C. acutus haplotypes in animals classified as C. moreletti. Low haplotypic diversity was observed for C. acutus (0.455 ± 0.123) and for C. moreletii (0.505 ± 0.158). A phylogenetic tree was obtained in which the sequences of C. acutus and C. moreletii were grouped into two well-defined clades. Organisms identified phenotypically as C. acutus but with C. moreletii genes were separated into a different clade within the clade of C. moreletii. Conclusions: There are reproductive individuals with haplotypes different from those of the species. This study provides a small but significant advance in the genetic knowledge of both crocodile species and the use of mitochondrial markers, which in this case, the COX1 gene allowed the detection of hybrid organisms in wild and captive populations. Conservation efforts for both species of crocodiles should prevent the crossing of both threatened species and should require the genetic identification of pure populations, to design effective conservation strategies considering the possibility of natural hybridization in areas of sympatry. Palabras clave: ADN mitocondrial; citocromo C oxidasa; diversidad haplotípica; diversidad de nucleótidos; hibridación, Sistema de código de barras de la vida.
Altitudinal distribution of the functional feeding groups of aquatic macroinvertebrates using an ecological network in Andean streams
Introduction: Analysis of functional feeding groups (FFG) in aquatic macroinvertebrates is important in understanding the structure, function, and dynamics of ecological processes ecosystems. Modularity refers to the degree of compartmentalization of food webs and varies between -1 and 1. A network with a modularity value close to 1 is resilient to disturbances and can be interpreted as an indicating factor for the stability of communities. Objective: In this study, we analyzed the trophic structure of benthic macroinvertebrates in La Nitrera stream, the San Juan River, and the Cauca River. Methods: The study was supported by ecological networking techniques using Gephi software. We studied nine sites in dry, rainy, and transition seasons in 2017 and 2018, monitoring changes in the altitude gradient. At each of the sites, the organisms were captured and determined, and physicochemical and hydraulic information was obtained. Results: The variance component analysis allowed to explain the variability of the data by relating the following environmental variables: FFG, diversity, richness, modularity, season, and time. Simple multifactorial ANOVA indicated that significant changes in FFG were associated with altitude, and modularity to time. The allocation of the FFG was done by stomach analysis and secondary information. Conclusion: The transition season had the highest modularity, possibly due to the recolonization of some biotopes caused by the decrease in riverbed velocity. La Nitrera and San Juan presented higher values than the Cauca, which may indicate that the altitudinal change and velocity of water currents affects the compartmentalization of the network.
Effects of nutrient (N, P, K) fertilization on the dynamics of fine roots in tropical rain forests with different soil texture in the Colombian Pacific region
Introduction: Fine root dynamics include production, turnover and decomposition; they are crucial to forest health, affect the entire biogeochemical complex of the ecosystem, and consequently, they substantially affect carbon balance. However, the influence of environmental factors and soil nutrient limitation on fine roots presents considerable uncertainties and has not been studied in tropical forests with more than 7 000 mm annual rainfall. Objective: To measure the effect of fertilization on fine roots in the high precipitation Chocó forest. Methods: We worked in two sites of the Chocó region, Colombia (August 2014-May 2015), where rainfall exceeds 10 000 mm per year. We applied five fertilization treatments (N, P, K, NPK and Control) to two soil type plots. Soil cylinders were removed at pre-established intervals to measure roots. Results: Phosphorus applications increased fined roots; and more fine roots were produced in sandy than in loam soil. The effects of fertilization were related, but not clearly determined by edaphic conditions. Conclusions: In this Chocó forest, the production of fine roots was higher in sandy and nutrient-rich soils but belowground net primary productivity was limited by the content of edaphic Phosphorus.
Reverse-Transcription Loop-Mediated Isothermal Amplification and alternative protocols for lower cost, large-scale COVID-19 testing: lessons from an emerging economy
Introduction: Most successful cases of COVID-19 pandemic mitigation and handling have relied on extensive reverse-transcription quantitative polymerase chain reaction (RT-qPCR). However, many emerging economies have struggled with current molecular testing demands due to economic, technical and technological constraints. Objective: To define a potential diagnostic protocol to increase testing capacity in current and post-pandemic conditions. Methods: We reviewed the literature, patents and commercial applications, for alternatives. Results: We found a good potential in saliva samples, viral inactivation and quick RNA extraction by heating; the use of an isothermal technology such as loop mediated isothermal amplification (LAMP) and naked eye test-result visualization by in-tube colorimetry or turbidity. Conclusions: Saliva samples with quick RNA extraction by heating and colorimetric LAMP are promising options for countries with economic and infrastructure limitations.
Bibliometrics of Sudanese scientific publications: Subjects, institutions, collaboration, citation and recommendations
Introduction: Sudan is the third largest country in Africa and has rich reserves of petroleum and other ground resources, but its per capita Gross Domestic Product is only $808 and researchers work in insufficient institutional facilities and with little funding. Previous studies about its scientific productivity have been limited to specific subjects and relatively short periods, with no large analyses until now. Objective: To analyze the scientific output of Sudan in depth, considering all research areas and several decades of scientific activity. Methods: We retrieved the documents with “Sudan” in field country in the Science Citation Index Expanded for the period 1900-2019. Results: We retrieved over 9 000 publications and found that most were articles; that citation was higher for review articles and book chapters, and that this index mostly covered articles in English. Beginning in 1972, the number of publications in this database has increased rapidly. The citation lifespan indicates slow growth in the Sudanese scientific literature, and collaboration is frequent both nationally and internationally, possibly because the scarce resources make collaboration almost compulsory. Most external collaboration is done with Saudi Arabia but citation is higher for articles resulting from international megaprojects, led by Europe and the USA, in which Sudanese researchers play secondary roles. Research focusses on applied technological subjects with little innovation value. Women play a smaller role in Sudanese science. Conclusions: Our recommendations for Sudanese science include increasing the number of women in leading research positions; providing funding directly to researchers (i.e., bypassing bureaucratic bodies); increasing basic research to avoid stagnation; training Sudanese researchers for leading positions; and identifying specific research areas where Sudan can lead in its region.
role of science in research and development
Diversity of birds along an elevation gradient in the Sierra de Manantlán Biosphere Reserve, Mexico
Introducción: México concentra alrededor del 11 % de las especies de aves del mundo, de las cuales el 20 % son endémicas del país, concentrándose el mayor número en la región occidental. Objetivo: Analizar la composición, diversidad y distribución de la avifauna a lo largo de un gradiente altitudinal en el occidente de México. Métodos: La investigación se realizó en la Reserva de la Biosfera Sierra de Manantlán. Registramos especies de aves vistas o escuchadas en 28 puntos de conteo fijos a lo largo de un gradiente de elevación de 1 000 m. La comparación de la riqueza y la completitud del muestreo se determinaron con curvas de interpolación y extrapolación. Las franjas se compararon con un Procedimiento no Paramétrico de Permutación Multirespuesta. Se usaron correlaciones y ordenaciones indirectas para analizar cambios en la riqueza y abundancia. Resultados: Registramos 129 especies (estimado: 96 % de completitud): 19 endémicas de México, 13 en alguna categoría de riesgo y 21 consideradas indicadoras. La elevación determinó la distribución y abundancia de las especies, y las franjas altitudinales más bajas, tuvieron los valores más altos de riqueza y abundancia. Conclusión: La mayor riqueza y abundancia de especies se registró a menor altitud, con un cambio significativo en la composición y tipo de especies indicadoras por franja.
Geographic distribution of the land snail family Spiraxidae (Gastropoda: Pulmonata) in Mexico
Introduction: Spiraxidae is the most diverse family of terrestrial gastropods in Mexico with a mainly neotropical distribution. However, the influence of environmental conditions in this region on its distribution is still poorly known. Objective: To determine zoogeographic affinities and the influence of environmental factors on the distribution of Spiraxidae in Mexico. Methods: We compiled museum distribution records and used models to establish areas with similar species composition, species concentration, affinities and relationship with environmental variables. Results: We found 231 species and subspecies, 96 in Veracruz state and 74 in Sierra Madre Oriental. The main zoogeographic affinity was neotropical. Mountain mesophyll forest had the most species and subspecies (93). Three of zone groups have a particular species composition and 67 % of the species are habitat specialists. Species presence follows an environmental gradient, with broadleaf evergreen tree cover and average annual precipitation as determining variables. Northern species had greater tolerance to aridity and reduced leaf cover. Conclusions: Spiraxidae has its greatest diversity in the Southern states of Mexico; however, the Northeastern zone has more species records. These snails mostly occur in mesophyll mountain forest and tropical evergreen forest. Species from Northern Mexico had greater tolerance to sites with low rainfall and less broadleaf evergreen tree cover than Southern species. Key words: Zoogeography; species richness; MaxEnt, multivariate analysis; spatial segregation
Seasonal droughts during the Miocene drove the evolution of Capparaceae towards Neotropical seasonally dry forests
Introduction: Neotropical seasonally dry forest (NSDF) climatic constraints increased endemism, and phylogenetic niche conservatism in species that are restricted to this biome. NSDF have a large number of endemic Capparaceae taxa, but it is unknown if phylogenetic niche conservatism has played a role in this pattern. Objective: We carried out an evolutionary analysis of the climatic niche of neotropical species of Capparaceae to identify whether the climatic constraints of NSDF have played a major role throughout the family’s evolutionary history. Methods: Using three chloroplastic (ndhF, matK, rbcL) and one ribosomal (rsp3) DNA sequences, we proposed a date phylogeny to reconstruct the evolutionary climatic niche dynamics of 24 Neotropical species of Capparaceae. We tested the relationship between niche dissimilarity and phylogenetic distance between species using the Mantel test. Likewise, we used a set of phylogenetic comparative methods (PGLS) on the phylogeny of Capparaceae to reconstruct the main evolutionary historic events in their niche. Results: Capparaceae originated in humid regions and subsequently, convergent evolution occurred towards humid and dry forest during the aridification phases of the Middle Miocene (16-11 Mya). However, adaptation towards drought stress was reflected only during the precipitation of the coldest quarter, where we found phylogenetic signal (Pagel ) for gradual evolution and, therefore, evidence of phylogenetic niche conservatism. We found convergent species-specific adaptations to both drought stress and rainfall during the Miocene, suggesting a non-phylogenetic structure in most climatic variables. Conclusions: Our study shows how the Miocene climate may have influenced the Capparaceae speciation toward driest environments. Further, highlights the complexity of climatic niche dynamics in this family, and therefore more detailed analyses are necessary in order to better understand the NSDF climatic constrictions affected the evolution of Capparaceae.
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Spatio-temporal distribution of planktonic cyanobacteria and environmental factors associated with their proliferation in the Cerrón Grande reservoir, El Salvador
Introduction: The 135 km2 Cerrón Grande reservoir is the largest wetland in El Salvador, recognized as "Wetland of International Importance" by the Ramsar Convention. It is also one of the most polluted ecosystems nationwide, facing serious problems, among them, a proliferation of cyanobacteria. Objective: To assess the relationships among environmental factors and the spatial and temporary distribution of cyanobacteria in the reservoir throughout a hydrological year. Methods: We extracted water with cyanobacteria from six fixed sites, from October 2018 through September 2019. Results: We identified 16 genera, the most abundant Microcystis sp. And Dolichospermum sp.; Microcystis sp. reached 1.5 x 106 cells/ml in June 2019, mainly in the north-west sector, which is shallow and close to the confluence zones where highly polluted tributaries reach the reservoir. The deeper south-east sector had low concentrations of these organisms. The environmental factors mostly related to this behavior were: phosphorus, electrical conductivity and Secchi value, as expected from a eutrophic body. Conclusions: Variation in the cellular concentration of cyanobacteria in this reservoir is highly influenced by rain, water mixing and nutrient content.
Which variables influence the herbivory amount on Montrichardia spp. (Araceae) in aquatic ecosystems?
Introduction: The study of herbivory is fundamental in ecology and includes how plants invest in strategies and mechanisms to reduce herbivore damage. However, there is still a lack of information about how the environment, plant density, and functional traits influence herbivory in aquatic ecosystems. Objective: To assess if there is a relationship between herbivory, environmental variables, and plant traits two species of Montrichardia, a neotropical aquatic plant. Methods: In September 2018, we studied 78 specimens of Montrichardia arborescens and 18 of Montrichardia linifera, in 18 sites in Melgaço, Pará, Brazil. On each site, we measured water depth, distance to the margin, and plant density. From plants, we measured plant height and leaf thickness, and photographed the leaves to calculate the specific leaf area and percentage herbivory. To identify anatomical structures, we collected fully expanded leaves from three individuals per quadrat. Results: For M. arborescens, plants with thicker leaves and higher specific leaf area have less herbivore damage. For M. linifera, plants from deeper sites and with thicker leaves had more herbivore damage, while plants that grew farther from the margin had less damage. We found anatomical structures related to defense, such as idioblast cells with phenolic compounds, and cells with solid inclusions that can contribute to avoiding severe damage. Conclusions: Herbivory in these Montrichardia species canbe explained by a combination of plant and environmental traits (patch isolation and water depth). The main plant traits are leaf thickness and area, but chemical compounds and solid inclusions also help Montrichardia to sustain less damage than other macrophytes.
Predation, reproduction, and development of the lady beetle Hippodamia convergens (Coleoptera: Coccinellidae)
Introduction: Keeping populations of predatory insects in the agroecosystem by offering them prey, as well as food resources from plants, is important for enhancing conservation biological control. Objective: To determine if the consumption of prey and floral food resources enhances the biological attributes of the predator Hippodamia convergens. Methods: We fed the beetle larvae two species of aphids; and the adults were fed aphids, maize tassels, and two non-cultivated plant species. We checked gut sugar in the predator by the cold anthrone test and pollen presence by the acetolysis method. Demographic experiments were done in the first 40 days after female emergence, under controlled conditions (25 °C ± 0.5; 75 % ± 1.75 Relative Humidity; Light 12 h: Darkness 12 h). Results: H. convergens did not consume fructose, but only pollen from Sorghum halepense, Parthenium hysterophorus or Zea mays. Developmental time (egg-adult) of the predator was shorter (21.4 days) when it consumed Rhopalosiphum maidis than Uroleucon nigrotibium (24.6 days); survival (L1-adult) and sex ratio did not change. Average fecundity was higher (55.5 eggs / 40 days) when consuming U. nigrotibium with pollen from P. hysterophorus, than U. nigrotibium (22.5 eggs / 40 days) or R. maidis with pollen from Zea mays (11 eggs / 40 days). The intrinsic rate of natural growth was higher when consuming U. nigrotibium with pollen from P. hysterophorus (0.055), than U. nigrotibium (0.034) or R. maidis with pollen from Z. mays (0.019). Predation rate (L1-L5) was higher when consuming R. maidis (0.65) than U. nigrotibium (0.51). Conclusions: Aphid prey species and its combination with pollen from maize and non-cultivated plants affected development time, reproduction, and predation rate of H. convergens.
Effect of vegetation cover on dung beetles (Coleoptera: Scarabaeinae) and their ecological functions in an Andean forest of Colombia
Introduction: Dung beetles perform important functions in terrestrial ecosystems, but anthropic pressures negatively affect them. These effects are well documented for Neotropical lowland forests, but have been little studied in Andean forests. Objectives: To evaluate how the attributes of dung beetle communities and three of their ecological functions differ in three land uses at the "Hacienda El Ocaso". Additionally, the relationships between attributes and functions, and among the tree different functions, were evaluated. Methodology: Using pitfall traps, dung beetles were sampled in three vegetation covers representing different land uses: secondary forest, mixed forest and livestock pastures (three independent sites per cover). The community attributes that were evaluated were abundance, number of species, biomass, and community weighted mean of body length; the functions that were measured were faeces removal, soil excavation, and secondary seed dispersal. Results: It was found that both community attributes and ecological functions are being negatively affected by the change in land use, mainly by livestock use. Most of the community attributes were positively correlated with functions; soil excavation and seed dispersal were strongly correlated with the removal of faeces. Conclusion: This study contributes to our understanding of the dung beetle fauna and its functional importance in the forests of the Andean region and how they are affected by land use change.
Hematological reference values for Alouatta palliata (Primates: Atelidae) and Cebus imitator (Primates: Cebidae) from the Pacific Coast of Costa Rica
Introduction: Wildlife hematological patterns are fundamental for health monitoring, and allows elucidating variations both within and between populations. Among these, hematological parameters are particularly valuable to evaluate the health status of neotropical primate species in the wild. Objective: To define hematological reference values for two species of monkeys in Costa Rica. Methods: During 2014, we collected blood samples from free-ranging mantled howler monkeys, Alouatta palliata (17 females, 18 males) and white-faced capuchin monkeys, Cebus imitator (5 females, 7 males) in seven localities of the Costa Rican Pacific coast. Results: For both species, the hematological values were higher in males, and howler monkey populations differed significantly except for platelets. Conclusions: These hematological values, which differ by sex and locality, will help evaluate the health status of these neotropical primate populations.
Comparison of fish assemblages recorded by visual census and video census
Introduction: Underwater visual censuses are the basis of many studies on fish ecology, however, a series of limitations and errors influence the traditional visual estimation of fish richness and abundance. Video techniques have been proposed to mitigate such errors, but there are few studies that compare the effectiveness of both methods. Objective: To compare the estimates obtained through the traditional census and the video census of the fish community of two localities in the central Mexican Pacific. Methods: We studied the fish community of two bays of Huatulco, Oaxaca, Mexico. We established sampling points in each bay and applied a traditional census and a diver-operated video census. We used comparison tests and analysis of similarity tests to compare richness, abundance and diversity by locality; and permutation tests for the same parameters at each sampling point. Results: Both censuses provide similar estimates regarding the richness, abundance, and diversity by locality and by sampling points. There were no statistically significant differences between traditional census and a diver-operated video census in terms of richness, abundance, and diversity. Conclusions: Video census using the diver-operated video technique can be used as a complement or as an alternative to traditional census. Its use can provide a more complete assessment, increase data acquisition, and implement long-term monitoring programs in areas where there are economic limitations for its operation.
Patterns of vertebrate biodiversity in a tropical dry and mangrove forest matrix
Introduction: Tropical dry forests and mangroves, two of the world’s most endangered ecosystems, each host a different set of environmental conditions which may support unique assemblages of species. However, few studies have looked at the unique vertebrate biodiversity in regions where both habitats occur side-by-side. Objective: To assess the vertebrate diversity and patterns of habitat usage in a mangrove and tropical dry forest matrix in an unprotected region of Northwestern Costa Rica. Methods: The study was conducted in a 7 km2 matrix of mangrove and tropical dry forests between Cabuyal and Zapotillal bays in Northwestern Costa Rica, South of Santa Rosa National Park. From September 2017 to March 2018, we used 13 automatic camera traps over 1 498 trap days to capture species utilizing the region and assess their patterns of habitat usage both spatially and temporally. Results: Seventy vertebrate species from 42 families in 27 orders were detected, including several globally threatened species. Over half of all species were detected in only one habitat, particularly amongst avian (78 %) and mammalian (42 %) species. Tropical dry forests hosted the greatest number of unique species and supported a greater percentage of herbivores than mangrove or edge habitats, which were dominated by carnivorous and omnivorous species. Mean detections per camera trap of all species increased significantly from the coldest and wettest month (Oct) to the hottest and driest months (Jan & Feb) in tropical dry forests. Sample-based rarefaction analysis revealed that survey length was sufficient to sample the tropical dry forest and edge habitats, though mangroves require further sampling. Conclusions: Taxa found to utilize different forest types may utilize each for different stages of their life cycle, moving between areas as environmental conditions change throughout the year. General patterns of global biodiversity favoring carnivore and omnivore usage of mangrove forests was confirmed in our study.
Internal ultrastructure of the planktonic larva of the coral Porites panamensis (Anthozoa: Scleractinia)
Introduction: The scleractinian coral life cycle includes planktonic larvae that settle on the benthos, allowing the primary polyp to clone and build a sexually reproducing adult colony. The larval physiology and ecology of Eastern Tropical Pacific scleractinians needs the exploration of basic aspects such as the internal morphology of planulae. Objective: To describe histological and cytological characteristics of Porites panamensis larvae. Methods: During August-July 2019, at Islas Marias Biosphere Reserve, Central Mexican Pacific, we made 14 collections of coral larvae and identified the species with C cytochrome oxidase subunit 1 gene. We used a scanning electron microscope and other techniques. Results: The ectoderm was composed by heterogeneous, mono-ciliated, columnar epithelial cells. Nematocysts were clustered at the oral pole of the ectoderm, and cells were evident in the aboral pole of the ectoderm gland. The endoderm had secretory cells, lipids and symbionts. Conclusions: The abundance of secretory cells and nematocysts in the aboral pole suggests their importance in substrate exploration and larval settlement. Our results support previous descriptions of larval ultrastructure in other coral species.