Assessing tropical freshwater fish diversity: altitudinal, seasonal, and circadian insights from the Sarapiquí River, Costa Rica

Authors

DOI:

https://doi.org/10.15517/pcw7kw36

Keywords:

Sarapiquí River sub-basin; freshwater fishes; seasonality; altitudinal gradient; circadian distribution.

Abstract

Introduction: The Sarapiquí River basin in Costa Rica, characterized by significant environmental diversity and increasing human impact, serves as a valuable location to examine the dynamics of tropical freshwater fish communities, including variations by altitude, season, and day-night cycles, with the latter being an important factor when assessing nocturnal species.

Objectives: To describe the richness, abundance, and size structure of freshwater fish in the Sarapiquí River sub-basin.

Methods: Ichthyofaunal surveys were conducted monthly at sites along an altitudinal gradient from 48 to 409 m a.s.l. Two capture methods were used: cast netting and electrofishing. At each site, both daytime and nighttime sampling sessions took place. Additionally, the physicochemical parameters of the water were recorded to characterize the environmental conditions at each site.

Results: A total of 1,042 individuals from 16 species and 12 families were recorded. Electrofishing captured most individuals (15 species; n = 765), while cast nets yielded 12 species (n = 277). Dominant taxa were Dajaus monticola (28%), Rhamdia laticauda (26%), Tomocichla tuba (14%), and Astyanax orstedii (12%). Richness peaked in Chilamate (13 species) and was lowest in San Miguel and Cariblanco, following an altitudinal trend. Abundance was higher at night (602 vs. 440 individuals), and some species were exclusively observed during the night. CCA explained 60.3% of the species variance, highlighting temperature, conductivity, and dissolved solids as key predictors.

Conclusions: This study characterized the ichthyofauna of the Sarapiquí River sub-basin between April 2013 and March 2014, assessing variations in altitude, season, and time of day. Abundant species (D. monticola, R. laticauda, T. tuba, A. orstedii) and vulnerable taxa (Hypostomus aspidolepis, Gobiomorus dormitor, Joturus pichardi) were identified, with the distribution range of G. dormitor extended up to 189 m a.s.l. Species richness and abundance decreased with altitude, although local factors such as habitat and riparian cover influenced patterns. Circadian sampling revealed nocturnal species underestimated in diurnal surveys. Temperature and conductivity were the main environmental variables associated with fish diversity.

Downloads

Download data is not yet available.

References

Angermeier, P. L., & Karr, J. R. (1983). Fish communities along environmental gradients in a system of tropical streams. Environmental Biology of fishes, 9(2), 117-135.

Angulo, A. (2021). New records and range extensions to the Costa Rican freshwater fish fauna, with an updated checklist. Zootaxa, 5083(1), 1-72.

Angulo, A., & Garita-Alvarado, C. A. (2013). Peces comunes de la cuenca del río Sarapiquí, Costa Rica. Ciencia, Arte y Tecnología, San José.

Arrington, D. A., & Winemiller, K. O. (2004). Organization and maintenance of fish diversity in shallow waters of tropical floodplain rivers, Proceedings of the Second International Symposium on the Management of Large Rivers for Fisheries (Vol. 2, pp. 25-36). FAO Regional Office for Asia and the Pacific Bangkok.

Bacheler, N. M., Neal, J. W., & Noble, R. L. (2004). Diet overlap between native bigmouth sleepers (Gobiomorus dormitor) and introduced predatory fishes in a Puerto Rico reservoir. Ecology of freshwater fish, 13(2), 111-118.

Breiman, L. (2001). Random forests. Machine Learning, 45(1), 5–32. https://doi.org/10.1023/A:1010933404324

Bussing, W. A. (1993). Fish communities and environmental characteristics of a tropical rain forest river in Costa Rica. Revista de Biología Tropical, 41(3B), 791-809.

Bussing, W. A. (1998). Peces de las aguas continentales de Costa Rica (2ª ed., 1ª reimp.). Universidad de Costa Rica.

Bussing, W. A. (2002). Peces de las aguas continentales de Costa Rica / Freshwater fishes of Costa Rica (2.ª ed.). Editorial de la Universidad de Costa Rica.

Capps, K. A., & Flecker, A. S. (2013). Invasive fishes generate biogeochemical hotspots in a nutrient-limited system. PLOS One, 8(1), e54093.

Castillo-Pérez, D. (2016). Composición de especies y vulnerabilidad de peces de los ríos Sabogal y Medio Queso, Vertiente Atlántica Norte de Costa Rica. Brenesia, 85, 43-54.

Castillo Pérez, D. (2018). Abundancia, relaciones longitud-peso y aspectos reproductivos de la tilapia (Oreochromis niloticus) y del pleco (Hypostomus cf. aspidolepis) en el Río Sabogal, cuenca del Río Frío, vertiente atlántica norte de Costa Rica [Tesis de Licenciatura, Universidad de Costa Rica]. Repositorio del SIBDI-UCR. https://repositorio.sibdi.ucr.ac.cr/handle/123456789/6434

Cheung, W. W. L., Pitcher, T. J., & Pauly, D. (2005). A fuzzy logic expert system to estimate intrinsic extinction vulnerabilities of marine fishes to fishing. Biological Conservation, 124(1), 97–111. https://www.fishbase.se

Cotta-Ribeiro, T., & Molina-Ureña, H. (2009). Ontogenic changes in the feeding habits of fishes Agonostomus monticola (Mugilidae) and Brycon behreae (Characidae) in Térraba River, Costa Rica. Revista de Biología Tropical, 57(S1), 285–290.

Cotta-Ribeiro, T. C., & Umaña-Villalobos, G. (2010). Distribution of Agonostomus monticola and Brycon behreae in the Río Grande de Térraba, Costa Rica and relations with water flow. Neotropical Ichthyology, 8, 841-849.

Cruz, G. A. (1987). Reproductive biology and feeding habits of Cuyamel, Joturus pichardi, and Tepemechín, Agonostomus monticola (Pisces: Mugilidae), from Río Plátano, Mosquitia, Honduras. Bulletin of Marine Science, 40(1), 63–72.

Espinoza-Mendiola, M. (2008). Sondeo ecológico rápido de las comunidades de peces tropicales en un área de explotación minera en Costa Rica. Revista de Biología Tropical, 56(4), 1971-1990.

Farah-Pérez, A., Umaña-Villalobos, G., Picado-Barboza, J., & Anderson, E. P. (2020). An analysis of river fragmentation by dams and river dewatering in Costa Rica. River Research and Applications, 36(8), 1442-1448.

Feldheim, K. A., Sanchez, P. J., Matamoros, W. A., Schaefer, J. F., & Kreiser, B. R. (2009). Isolation and characterization of microsatellite loci for mountain mullet (Agonostomus monticola). Molecular ecology resources, 9(6), 1482-1484.

Feutry, P., Hartmann, H. J., Casabonnet, H., & Umaña, G. (2010). Preliminary analysis of the fish species of the Pacific Central American mangrove of Zancudo, Golfo Dulce, Costa Rica. Wetlands ecology and management, 18(6), 637-650.

Freeman, M. C., Pringle, C. M., Greathouse, E. A., & Freeman, B. J. (2003). Ecosystem-level consequences of migratory faunal depletion caused by dams. American Fisheries Society Symposium (Vol. 35, No. January, pp. 255-266) American Fisheries Society.

Gebrekiros, S. T. (2016). Factors affecting stream fish community composition and habitat suitability. Journal of Aquaculture and Marine Biology, 4(2), 00076.

Gilliam, J. F., Fraser, D. F., & Alkins-Koo, M. (1993). Structure of a tropical stream fish community: a role for biotic interactions. Ecology, 74(6), 1856-1870.

Instituto Meteorológico Nacional. (2026). Pronóstico del tiempo. IMN. https://www.imn.ac.cr/

Instituto Costarricense de Electricidad [ICE]. (1974). Boletín Hidrológico Nº 9 de 1974 (Dirección de Planificación Eléctrica, Departamento de Estudios Básicos, Oficina de Hidrología)

Ibáñez, C., Belliard, J., Hughes, R. M., Irz, P., Kamdem-Toham, A., Lamouroux, N., Tedesco, P. A., & Oberdorff, T. (2009). Convergence of temperate and tropical stream fish assemblages. Ecography, 32(4), 658-670.

Kuhn, M. (2008). Building predictive models in R using the caret package. Journal of Statistical Software, 28(5), 1–26. https://doi.org/10.18637/jss.v028.i05

Liaw, A., & Wiener, M. (2002). Classification and regression by randomForest. R News, 2(3), 18–22. https://CRAN.R-project.org/doc/Rnews/

Lorion, C. M., & Kennedy, B. P. (2009). Riparian forest buffers mitigate the effects of deforestation on fish assemblages in tropical headwater streams. Ecological Applications, 19(2), 468-479.

Malik, D. S., Sharma, A. K., Sharma, A. K., Thakur, R., & Sharma, M. (2020). A review on impact of water pollution on freshwater fish species and their aquatic environment. En: Advances in environmental pollution management: wastewater impacts and treatment technologies, (Vol. 1, pp. 10–28). Agriculture and Environmental Science Academy.

Martinez-Moreno, R., Palomares-Garcia, J., & Falcón-Rodriguez, J. L. (2015). Monitoring the reproductive season of the bobo fish (Joturus pichardi) in the Tecolutla river in Veracruz. Ciencia Pesquera 23(1): 47-51.

McLarney, W. O., Mafla, M., Arias, A. M., & Bouchonnet, D. (2010). The threat to biodiversity and ecosystem function of proposed hydroelectric dams in the la amistad world heritage site, Panamá and Costa Rica. Programa de Biomonitoreo Asociación ANAI.

Mendoza, R., Contreras, S., Ramírez, C., Koleff, P., Álvarez, P., & Aguilar, V. (2007). Los peces diablo. Biodiversitas, 70, 1-5.

Musick, J. A., Harbin, M. M., Berkeley, S. A., Burgess, G. H., Eklund, A. M., Findley, L., Gilmore, R. G., Golden, J. T., Ha, D. S., Huntsman, G. R., McGover, J. C., & Sedberry G. R., & Wright, S. G. (2000). Marine, estuarine, and diadromous fish stocks at risk of extinction in North America (exclusive of Pacific salmonids). Fisheries, 25(11), 6-30.

Nakamura, G., Vicentin, W., & Súarez, Y. R. (2021). Taxonomic and phylogenetic beta diversity in headwater stream fish communities of the Paraná and Paraguai River basins. Neotropical Ichthyology, 19(01), e200126.

Oksanen, J., Blanchet, F. G., Friendly, M., Kindt, R., Legendre, P., McGlinn, D., Minchin, P. R., O’Hara, R. B., Simpson, G. L., Solymos, P., Stevens, M. H. H., Szoecs, E., & Wagner, H. (2022). vegan: Community ecology package (Version 2.6-4) [Computer software]. CRAN. https://CRAN.R-project.org/package=vegan

Organización para Estudios Tropicales. (2025). Datos meteorológicos de la Estación Biológica La Selva, Sarapiquí, Costa Rica [Base de datos]. Recuperado el 15 de agosto de 2025 de https://tropicalstudies.org/portfolio/information-resources/

Picado-Barboza, J., & Umaña-Villalobos, G. (2018). Fish assemblages and their ecological traits along an elevational gradient in the Río Pacuare, Costa Rica. Revista de Biología Tropical, 66(S1), S132-S152.

Poff, N. L., & Allan, J. D. (1995). Functional organization of stream fish assemblages in relation to hydrological variability. Ecology, 76(2), 606-627.

Pringle, C. M. (1991). Geothermally modified waters surface at La Selva Biological Station, Costa Rica: volcanic processes introduce chemical discontinuities into lowland tropical streams. Biotropica, 523-529.

R Core Team. (2023). R: A language and environment for statistical computing. R Foundation for Statistical Computing. https://www.R-project.org/

Reebs, S. G. (2002). Plasticity of diel and circadian activity rhythms in fishes. Reviews in Fish Biology and Fisheries, 12(4), 349–371. https://doi.org/10.1023/A:1025371804611

Restrepo-Santamaria, D., Navia, A. F., Palacio, J., & Jiménez-Segura, L. F. (2022). Feeding strategy of fish that colonize reservoirs in the Magdalena river basin. Universitas Scientiarum, 27(3), 234–252. https://doi.org/10.11144/javeriana.sc273.fsof

Sánchez, K., Jiménez-Otárola, F., Velásquez, S., Piedra, M., & Romero, E. (2004). Metodología de análisis multicriterio para la identificación de áreas prioritarias de manejo del recurso hídrico en la cuenca del río Sarapiquí, Costa Rica. Recursos Naturales y Ambiente (41), 88-95.

Sánchez-Hernández, J. (2023). Fresh perspectives on the River Continuum Concept require trophic ecology approaches focused on food web structure and energy mobilisation routes. Journal of Animal Ecology, 92(5), 957-964.

Sánchez-Vázquez, F. J., López-Olmeda, J. F., Vera, L. M., Migaud, H., López-Patiño, M. A., & Míguez, J. M. (2019). Environmental cycles, melatonin, and circadian control of stress response in fish. Frontiers in Endocrinology, 10, 279.

ter Braak, C. J. F. (1986). Canonical correspondence analysis: A new eigenvector technique for multivariate direct gradient analysis. Ecology, 67(5), 1167–1179. https://doi.org/10.2307/1938672

Thomas, M. R., & Sabaj, M. H. (2020). Heptateridae: seven-finned catfishes. En M. L., Warren, B. M., Burr, A. A., Echelle, B. R., Kuhajda, & S. T. Ross (Eds). Freshwater fishes of North America: Characidae to poeciliidae (pp 123-148). JHU Press

Tiffer-Sotomayor, R. (2005). Análisis ecológico del pez machín (Agonostomus monticola) en la Cuenca del Río Aranjuez, Costa Rica. Compañía Nacional de Fuerza y Luz.

IUCN (International Union for Conservation of Nature). (2018). The IUCN red list of threatened species (Version 2018-2). https://www.iucnredlist.org

Valente-Neto, F., Mello, J. L., Pestana, G. C., Shimabukuro, E. M., de Siqueira, A. S., Covich, A. P., & Saito, V. S. (2025). Ecological perspectives on the organization of biodiversity in Neotropical streams. Hydrobiologia, 852(12), 3025-3047.

Winemiller, K. O., Agostinho, A. A., & Caramaschi, É. P. (2008). Fish ecology in tropical streams. In Tropical stream ecology (pp. 107-III). Academic Press.

Winemiller, K. O., & Ponwith, B. J. (1998). Comparative ecology of eleotrid fishes in Central American coastal streams. Environmental Biology of Fishes, 53(4), 373-384.

Published

2026-08-04