Odovtos - International Journal of Dental Sciences ISSN Impreso: 1659-1046 ISSN electrónico: 2215-3411

OAI: https://revistas.ucr.ac.cr/index.php/Odontos/oai
Genetic Analysis of TPM1 Gene Polymorphism (rs11071720) in Patients with Non-Syndromic Cleft Lip/Palate in the South Indian Population. A Case Control Study
PDF
HTML
EPUB

Keywords

Polymorphism; TPM1 gene; Non-syndromic cleft lip and cleft palate; Genetic disorder.
Polimorfismo; Gen TPM1; Labio y paladar hendido no sindrómicos; Trastorno genético.

How to Cite

Murugesan, D., Felicita, A. S., & Jayaseelan, V. P. (2024). Genetic Analysis of TPM1 Gene Polymorphism (rs11071720) in Patients with Non-Syndromic Cleft Lip/Palate in the South Indian Population. A Case Control Study. Odovtos - International Journal of Dental Sciences, 222–232. https://doi.org/10.15517/ijds.2024.59889

Abstract

The aim of this study was to find out if there was an association between TPM1 gene polymorphism (rs11071720) and non-syndromic cleft lip and palate in humans. Twenty five patients with non-syndromic cleft lip and palate (NSCL/P) and twenty five healthy patients as controls were enrolled in the study. Whole blood drawn from the participants was used to obtain genomic DNA. Sequence specific primers were used to amplify the region spanning the polymorphic site of the TPM1 gene using polymerase chain reaction (PCR). The genotype of the subjects was identified employing the RFLP technique. The genotype and allele frequency distributions in the non-syndromic cleft lip and cleft palate patients and control groups were compared using Chi-square test. In the NSCL/P, the genotype in the order from highest to lowest frequency was TC (48%), followed by CC (32%) and TT (20%). Although the genotype frequency of the case and the control groups were found to be in agreement with Hardy Weinberg Equilibrium, the genotype frequencies TC, CC and TT of the polymorphism (rs11071720) among the two groups were not statistically significant which was evident from the  p-value 0.8472. No significant association was found between TPM1 gene (rs11071720) polymorphism and NSCL/P.

https://doi.org/10.15517/ijds.2024.59889
PDF
HTML
EPUB

References

Leslie E.J. Advances in Understanding the Genetic Architecture of Cleft Lip and Palate Disorders. 2012. 219 p.

Smith T.L., University of Iowa. Department of Anatomy and Cell Biology. Use of Zebrafish to Test Candidate Genes and Mutations Associated with Structural Birth Defects, Primarily in Cleft Lip and Palate. 2014. 49 p.

Jarvinen J.M. A Review of Genetic Studies of Cleft Lip and Palate. 1965. 280 p.

Ahmad W., Malik S. Mutation Analysis of MSX1 in Pakistani Population: Pierre Robin Sequence and Non Syndromic Cleft Lip And/or Palate (Orofacial Cleft). LAP Lambert Academic Publishing; 2014. 72 p.

Almasri M.A. Designing Strategies for Cleft Lip and Palate Care. BoD-Books on Demand; 2017. 178 p.

Cobourne M.T. Cleft Lip and Palate: Epidemiology, Aetiology, and Treatment. Karger Medical and Scientific Publishers; 2012. 171 p.

Memon A., Khidiri F.F., Waryah Y.M., Nigar R., Bhinder M.A., Shaikh A.M., et al. Association of Gene Variants with Nonsyndromic Cleft Lip and/or Palate in the Pakistani Population. Cleft Palate Craniofac J. 2023 Jul 10; 10556656231185218.

Crane-Smith Z., De Castro SCP, Nikolopoulou E, Wolujewicz P., Smedley D., Lei Y., et al. A non-coding insertional mutation of Grhl2 causes gene over-expression and multiple structural anomalies including cleft palate, spina bifida and encephalocele. Hum Mol Genet. 2023 Aug 26; 32 (17): 2681-92.

Wu Z.Y., Yue H.T., Li J., Yang J.G., Bian Z., He M. [Two novel and KMT2D mutations on the same allele cause Kabuki syndrome]. 2023 Aug 3; 58 (8): 809-14.

Yapijakis C., Douka A., Gintoni I., Agiannitopoulos K., Vlachakis D., Chrousos G.P. Clinical and Molecular Genetic Analysis of Cases with Ectodermal Dysplasia. Adv Exp Med Biol. 2023; 1423: 181-6.

Simpson C.L., Kimble D.C., Chandrasekharappa S.C., N.I.S.C. Comparative Sequencing Program, Alqosayer K., Holzinger E., et al. A novel de novo TP63 mutation in whole-exome sequencing of a Syrian family with Oral cleft and ectrodactyly. Mol Genet Genomic Med. 2023 Aug; 11 (8): e2179.

Slavec L., Geršak K., Eberlinc A., Hovnik T., Lovrečić L., Mlinarič-Raščan I., et al. A Comprehensive Genetic Analysis of Slovenian Families with Multiple Cases of Orofacial Clefts Reveals Novel Variants in the Genes and. Int J Mol Sci [Internet]. 2023 Feb 21; 24 (5). Available from: http://dx.doi.org/10.3390/ijms24054262

Yapijakis C., Davaria S., Gintoni I., Chrousos G.P. The Impact of Genetic Variability of TGF-Beta Signaling Biomarkers in Major Craniofacial Syndromes. Adv Exp Med Biol. 2023; 1423: 187-91.

Sodero G., Colonna A.T., Purcaro V., Onesimo R., Zampino G., Vento G. A newborn with ectrodactyly, tetralogy of Fallot, esophageal atresia, hypospadias and TP63 gene mutation: A new type of EEC Syndrome? J Neonatal Perinatal Med. 2023; 16 (2): 349-53.

Salami A.Y., Agbara K.S., Moulot O.M., Ehua A.M., Opaleye T.O., Adesina A.O., et al. Van Der Woude Syndrome: A Case Series at Chu D’ Treichville, Abidjan, Cote D' Ivoire. J West Afr Coll Surg. 2023 Jun 27; 13 (3): 56-8.

Al-Kurbi A.A., Aliyev E., AlSa’afin S., Aamer W., Palaniswamy S., Al-Maraghi A., et al. A Complex Intrachromosomal Rearrangement Disrupting in a Family with Popliteal Pterygium and Van der Woude Syndromes. Genes [Internet]. 2023 Mar 31; 14 (4). Available from: http://dx.doi.org/10.3390/genes14040849

Naicker T., Alade A., Adeleke C., Mossey P.A., Awotoye W.A., Busch T., et al. Novel IRF6 variant in orofacial cleft patients from Durban, South Africa. Mol Genet Genomic Med. 2023 May; 11 (5): e2138.

Rattanasopha S. Mutation and Functional Analysis of SUMO1, PDGFRa and MiR-140 Genes in Non-syndromic Oral Clefts. 2009. 150 p.

Lin J.J., Eppinga R.D., Warren K.S., McCrae K.R. Human tropomyosin isoforms in the regulation of cytoskeleton functions. Adv Exp Med Biol. 2008; 644: 201-22.

Tetzlaff, M. T., Jackle, H., & Pankratz, M. J.. Lack of Drosophila cytoskeletal tropomyosin affects head morphogenesis and the accumulation of oskar mRNA required for germ cell formation. EMBO J, 1996; 15 (6): 1247-1254

Blanchard E.M., Iizuka K., Christe M., Conner D.A., Geisterfer-Lowrance A., Schoen F.J., Maughan D.W., Seidman C.E., Seidman J.G. Targeted ablation of the murine alpha-tropomyosin gene. Circ Res. 1997 Dec; 81 (6): 1005-10.

Rethinasamy, P., Muthuchamy, M., Hewett, T., Boivin, G., Wolska, B. M., Evans, C., Wieczorek, D. F.. Molecular and physiological effects of α-tropomyosin ablation in the mouse. Circulation Research, 1998; 82 (1): 116-123.

Rafighdoost H., Tabatabaei F., Bahari G., Hashemi M. Association of single nucleotide polymorphisms in TPM1 rs11071720, rs3803499, rs12148828, and rs1972041 with the risk of nonsyndromic cleft lip with or without cleft palate in a sample of the Iranian population, a preliminary report. Ann Hum Genet. 2019 Jul; 83 (4): 256-265.

Qian Y., Li D., Ma L., Zhang H., Gong M., Li S., Yuan H., Zhang W., Ma J., Jiang H., Pan Y., Wang L. TPM1 polymorphisms and nonsyndromic orofacial clefts susceptibility in a Chinese Han population. Am J Med Genet A. 2016 May; 170A (5): 1208-15.

Pan, Y., Han, Y., Zhang, H., Zhou, L., Li, D., Cai, Q., Wang, L. Association and cumulative effects of GWAS-identified genetic variants for nonsyndromic orofacial clefts in a Chinese population. Environmental and Molecular Mutagenesis, 2013; 54 (4): 261-267.

Moreno Uribe, L. M., Fomina, T., Munger, R. G., Romitti, P. A., Jenkins, M. M., Wehby, G.L. A population-based study of effects of genetic locion orofacial clefts. Journal of Dental Research, 2017; 96 (11): 1322-1329

Douka A., Goutzanis L., Vlachakis D., Chrousos G.P., Yapijakis C. Molecular Modeling Analysis Provides Genotype-Phenotype Correlation Insights in a Patient with Ankyloblepharon-Ectodermal Dysplasia-Clefting Syndrome. Genes [Internet]. 2023 Jun 10; 14 (6).

Yang K., Fu L.M., Chu X.Y., Zhang J., Chen W.Q., Yan Y.S., et al. Assessment of a novel variation in DHODH gene causing Miller syndrome: The first report in Chinese population. Mol Genet Genomic Med. 2023 Jul; 11 (7): e2186.

Zhao H., He Q., Wu X., Liang X., Jiao Y., Zhang Y., et al. Identification of rare loss-of-function variants in FAM3B associated with non-syndromic orofacial clefts. Genomics. 2023 May; 115 (3): 110630.

Petrin A.L., Zeng E., Thomas M.A., Moretti-Ferreira D., Marazita M.L., Xie X.J., et al. DNA methylation differences in monozygotic twins with Van der Woude syndrome. Front Dent Med [Internet]. 2023 Feb 17;4. Available from: http://dx.doi.org/10.3389/fdmed.2023.1120948

Prescott G.H. Oral Facial Genetics. 1976. 704 p.

Takahashi M., Hosomichi K., Yamaguchi T., Nagahama R., Yoshida H., Maki K., et al. Whole-genome sequencing in a pair of monozygotic twins with discordant cleft lip and palate subtypes. Oral Dis. 2018 Oct; 24 (7): 1303-9.

Velázquez-Aragón J.A., Alcántara-Ortigoza M.A., Estandia-Ortega B., Reyna-Fabián M.E., Méndez-Adame C.D., González-Del Angel A. Gene Interactions Provide Evidence for Signaling Pathways Involved in Cleft Lip/Palate in Humans. J Dent Res. 2016 Oct; 95 (11): 1257-64.

Li J., Zhu G., Kang X., Shen X., Chen S., Tang S., et al. Association Between TPM1 Gene Polymorphisms and Idiopathic Congenital Talipes Equinovarus Risk in a Chinese Population. Genet Test Mol Biomarkers. 2021 May; 25 (5): 355-60.

Yao Q., Zhang W., Zhang T. Association of single nucleotide polymorphisms in the 3’UTR region of TPM1 gene with dilated cardiomyopathy: A case-control study. Medicine . 2019 Nov; 98 (44): e17710.

Jaafar N., Gómez J., Kammoun I., Zairi I., Amara W.B., Kachboura S., et al. Spectrum of Mutations in Hypertrophic Cardiomyopathy Genes Among Tunisian Patients. Genet Test Mol Biomarkers. 2016 Nov; 20 (11): 674-9.

Li Y.D., Ji Y.T., Zhou X.H., Li H.L., Zhang H.T., Zhang Y., et al. Significance of sarcomere gene mutation in patients with dilated cardiomyopathy. Genet Mol Res. 2015 Sep 22; 14 (3): 11200-10.

Comments

Copyright (c) 2024 CC-BY-NC-SA 4.0

Downloads

Download data is not yet available.