Desarrollo de un marco computacional para la optimización mejorada de bioprocesos mediante algoritmos genéticos
DOI:
https://doi.org/10.15517/00je4649Keywords:
Algoritmos genéticos, fermentación de xilosa, optimización de bioprocesos, optimización híbrida, producción de xilitolAbstract
La optimización de bioprocesos frecuentemente implica modelos dinámicos no lineales que desafían los métodos basados en derivadas. En este estudio, se optimizó un modelo cinético para producir xilitol, mediante un esquema jerárquico de algoritmos genéticos (GA). Primero, un GA secundario minimizó una función objetivo económica. Posteriormente, un GA primario ajustó el tamaño de población y la fracción de entrecruzamiento del GA secundario. El GA secundario reveló un “valle de estabilidad” en el intervalo de fracción de entrecruzamiento: 0.60 ≤ cf ≤ 0.90, donde la convergencia fue estable y las desviaciones estándar se mantuvieron bajas. Las pruebas con la función de Ackley confirmaron que la rugosidad de la superficie de solución rige el desempeño del GA. El enfoque jerárquico identificó una configuración óptima: cf = 0.53 y población = 260, fuera del valle, que incrementó la función objetivo en un 3.1 % respecto al mejor valor dentro del valle. No se introdujeron modificaciones al modelo cinético ni al criterio económico, la ganancia se atribuye exclusivamente a la sintonización de los metaparámetros. Sin embargo, el tiempo de cómputo se incrementó, por tanto, sistemas de mayor tamaño podrían requerir estrategias híbridas, como modelos de fidelidad variable o esquemas de mutación adaptativa. Aun así, la mejora demostrada se traduce en beneficios económicos significativos y subraya el valor de la metaoptimización sistemática de los GA para bioprocesos industriales. Los resultados proporcionan un referente reproducible y una base para extender este marco a modelos más complejos, metaheurísticas híbridas y ajustes de parámetros guiados por aprendizaje automático.
Downloads
References
[1] T. A.-N. Nguyen y T.-A. Nguyen, "Genetic Algorithms for Chemical Engineering Optimization Problems," in Genetic Algorithms, S. Ventura, J.M. Luna, and J.M. Moyano, Eds. London, United Kingdom: IntechOpen, 2022, doi: 10.5772/ intechopen.104884.
[2] G. Venter, "Review of Optimization Techniques," in Encyclopedia of Aerospace Engineering, R. Blockley and W. Shyy, Eds. Chichester, United Kingdom: John Wiley & Sons, Ltd., 2010, doi: 10.1002/9780470686652.eae495.
[3] N. Brahimi, A. Dolgui, E. Gurevsky, and A. R. Yelles- Chaouche, "A literature review of optimization problems for reconfigurable manufacturing systems," IFAC-PapersOnLine, vol. 52, no. 13, pp. 433-438, Jan. 2019, doi:10.1016/j.ifacol.2019.11.097.
[4] V. Tomar, M. Bansal, and P. Singh, "Metaheuristic Algorithms for Optimization: A Brief Review," Eng. Proc., vol. 59, no. 1, Art. no. 238, 2024, doi: 10.3390/engproc2023059238.
[5] A. S. Ramadan and E. O. Elgendi, "A review of optimization techniques and algorithms used for FRP applications in civil engineering," J. Eng. and Appl. Sci., vol. 70, no. 1, Art. no. 61, Jun. 2023, doi: 10.1186/s44147-023-00209-5.
[6] John H. Holland, Adaptation in Natural and Artificial Systems. Cambridge, MA, USA: The MIT Press, 1992. [Online]. Available: https://mitpress.mit.edu/9780262581110/adaptation-in-natural-and-artificial-systems/
[7] S. Katoch, S. S. Chauhan, and V. Kumar, "A review on genetic algorithm: past, present, and future," Multimedia tools and applications, vol. 80, no. 5, pp. 8091-8126, 2021, doi: 10.1007/s11042-020-10139-6.
[8] M. A. El-Shorbagy and A. M. El-Refaey, "A hybrid genetic–firefly algorithm for engineering design problems," J. Comput. Des. and Eng., vol. 9, n.o 2, pp. 706-730, Apr. 2022, doi: 10.1093/jcde/qwac013.
[9] S. Zhang, Z. Ge, and Y. Lai, "Application of Genetic Algorithm in Optimizing a Chemical Adsorption Bed with Cacl2/ expanded Graphite Adsorbent," Procedia Eng., vol. 205, pp. 1828-1834, Jan. 2017, doi: 10.1016/j.proeng.2017.10.244.
[10] M. Rocha, I. Rocha, and E. Ferreira, "A new representation in evolutionary algorithms for the optimization of bioprocesses,"
2005 IEEE Congress on Evolutionary Computation, Edinburgh, UK, 2005, pp. 484-490 Vol. 1. doi: 10.1109/CEC.2005.1554722.
[11] J. O. Robles, C. Azzaro-Pantel, and A. Aguilar-Lasserre, "Optimization of a hydrogen supply chain network design under demand uncertainty by multi-objective genetic algorithms," Comput. & Chem. Eng., vol. 140, p. 106853, Sep. 2020, doi: 10.1016/j.compchemeng.2020.106853.
[12] L. Shu, P. Jiang, Q. Zhou, X. Shao, J. Hu, and X. Meng, "An on-line variable fidelity metamodel assisted Multi-objective Genetic Algorithm for engineering design optimization," Appl. Soft Comput., vol. 66, pp. 438-448, May 2018, doi: 10.1016/J.ASOC.2018.02.033.
[13] M. Gobbi, "A k, k-ε optimality selection based multi objective genetic algorithm with applications to vehicle engineering," Optim. Eng., vol. 14, no. 2, pp. 345-360, Jun. 2013, doi: 10.1007/s11081-011-9185-8.
[14] M. S. Krejca and C. Witt, "A Flexible Evolutionary Algorithm With Dynamic Mutation Rate Archive," arXiv.org, Apr. 2024, doi: 10.1145/3638529.3654076.
[15] X. Yan, H. Liu, Z. Zhu, and Q. Wu, "Hybrid genetic algorithm for engineering design problems," Cluster Comput., vol. 20, no. 1, pp. 263-275, Mar. 2017, doi: 10.1007/ s10586-016-0680-8.
[16] M. C. Aguitoni, L. V. Pavão, P. H. Siqueira, L. Jiménez, and M. A. da Silva Sá Ravagnani, "Heat exchanger network synthesis using genetic algorithm and differential evolution," Comput. & Chem. Eng., vol. 117, pp. 82-96, Sep. 2018, doi: 10.1016/j.compchemeng.2018.06.005.
[17] F. Sun, W. Du, R. Qi, F. Qian, and W. Zhong, "A Hybrid Improved Genetic Algorithm and Its Application in Dynamic Optimization Problems of Chemical Processes", Chin. J. Chem. Eng., vol. 21, no. 2, pp. 144-154, Feb. 2013, doi: 10.1016/S1004-9541(13)60452-8.
[18] S. K. Gupta and M. Ramteke, "Applications of Genetic Algorithms in Chemical Engineering II: Case Studies," in Applications of Metaheuristics in Process Engineering, J. Valadi and P. Siarry, Eds. Switzerland: Springer International
Publishing, 2014, pp. 61-87. doi: 10.1007/978-3-319-06508-3_3.
[19] J. S. Tumuluru and R. McCulloch, "Application of Hybrid Genetic Algorithm Routine in Optimizing Food and Bioengineering Processes," Foods, vol. 5, no. 4, Art. no. 4, Dic. 2016, doi: 10.3390/foods5040076.
[20] M. Rocha, R. Mendes, O. Rocha, I. Rocha, and E. C. Ferreira, "Optimization of fed-batch fermentation processes with bio-inspired algorithms," Expert Syst. Appl., vol. 41, no. 5, pp. 2186-2195, Apr. 2014, doi: 10.1016/j.eswa.2013.09.017.
[21] I. J. Peerzade, S. Mutturi, and P. M. Halami, "Improved production of RNA-inhibiting antimicrobial peptide by Bacillus licheniformis MCC 2514 facilitated by a genetic algorithm optimized medium," Bioprocess Biosyst. Eng., vol. 47, no. 5, pp. 683 695, May 2024, doi: 10.1007/s00449- 024-02998-2.
[22] H. Narayanan et al., "Bioprocessing in the Digital Age: The Role of Process Models," Biotechnology J., vol. 15, no. 1, Art. no. 1900172, Jan. 2020, doi: 10.1002/biot.201900172.
[23] D. A. DelVescovo, J. Li, D. A. Splitter, F. D. F. Chuahy, and P. Zhao, "Genetic algorithm optimization of a chemical kinetic mechanism for propane at engine relevant conditions," Fuel, vol. 338, Art. no. 127371, Apr. 2023, doi: 10.1016/j. fuel.2022.127371.
[24] A. Lapene, G. Debenest, M. Quintard, L. M. Castanier, M. G. Gerritsen, and A. R. Kovscek, "Kinetics Oxidation of Heavy Oil. 2. Application of Genetic Algorithm for Evaluation of Kinetic Parameters," Energy Fuels, vol. 29, no. 2, pp. 1119-1129, Feb. 2015, doi: 10.1021/ef501392k.
[25] Y. Wang, J. Luan, K. Luo, J. Fan, and T. Zhu, "Model reduction of coagulation cascade based on genetic algorithm," Int. J. Num. Methods Biomed. Eng., vol. 38, no. 11, Art. no. 3652, Nov. 2022, doi: 10.1002/cnm.3652.
[26] V. K. Singh, I. Jiménez del Val, J. Glassey, and F. Kavousi, "Integration Approaches to Model Bioreactor Hydrodynamics and Cellular Kinetics for Advancing Bioprocess Optimisation," Bioeng., vol. 11, no. 6, Art. no. 6, Jun. 2024, doi: 10.3390/bioengineering11060546.
[27] N. L. Mohamad, S. M. Mustapa Kamal, M. N. Mokhtar, S. A. Husain, and N. Abdullah, "Dynamic mathematical modelling of reaction kinetics for xylitol fermentation using Candida tropicalis," Biochem. Eng. J., vol. 111, pp. 10-17, May 2016, doi: 10.1016/j.bej.2016.02.017.
[28] A. A. Yawalkar, V. G. Pangarkar, and A. A. C. M. Beenackers, "Gas hold-up in stirred tank reactors," Can. J. Chem. Eng., vol. 80, no. 1, pp. 158-166, 2002, doi: 10.1002/ cjce.5450800117.
[29] MATLAB. (R2024b). The MathWorks, Inc.
[30] R. L. A. Burden, Análisis numérico, 7th. ed. Mexico City, Mexico: Thomson Learning, 2002.
Downloads
Published
Issue
Section
License
Copyright (c) 2026 Leonardo Garro Mena (Autor/a)

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
In order to be considered an author, the researcher must:
- Has contributed substantially in the conception or design of the research, or in the interpretation of the data.
- Has taken part in the design of the research or in the critical study of the content.
- Has taken part in the approval of the final version of the work.
- Be able to answer any question that the published work may raise.
- An “author” must meet all of the above considerations (adapted from the International Committee of Medical Journal Editors http://www.icmje.org/recommendations/translations/spanish2015.pdf)
Authors wishing to publish in this journal agree with the following terms:
- Authors conserve the copyrights over their work and let the journal be the first publication venue for their manuscripts.
- Authors agree with the Creative Commons Attribution License established by the journal which allows them to distribute their work by mentioning the initial journal where the work was published.
- Authors can establish separate agreements for non-exclusive distribution of their work (i.e. work repository) by mentioning the journal as the initial publication venue.
- Authors may publish their works electronically (e.g. in institutional repositories or in their own website) only after the journal approves and publishes the manuscript.
- As of Fascicle 26 No.1 of 2016; copyrights are the property of the authors of the documents. Prior to that date, editorial policies indicated that this right belonged to Engineering: Journal of the University of Costa Rica.
Contributor Roles Taxonomy
- Conceptualization – Ideas; formulation or evolution of overarching research goals and aims.
- Data curation – Management activities to annotate (produce metadata), scrub data and maintain research data (including software code, where it is necessary for interpreting the data itself) for initial use and later re-use.
- Formal analysis – Application of statistical, mathematical, computational, or other formal techniques to analyze or synthesize study data.
- Funding acquisition - Acquisition of the financial support for the project leading to this publication.
- Investigation – Conducting a research and investigation process, specifically performing the experiments, or data/evidence collection.
- Methodology – Development or design of methodology; creation of models.
- Project administration – Management and coordination responsibility for the research activity planning and execution.
- Resources – Provision of study materials, reagents, materials, patients, laboratory samples, animals, instrumentation, computing resources, or other analysis tools.
- Software – Programming, software development; designing computer programs; implementation of the computer code and supporting algorithms; testing of existing code components.
- Supervision – Oversight and leadership responsibility for the research activity planning and execution, including mentorship external to the core team.
- Validation – Verification, whether as a part of the activity or separate, of the overall replication/reproducibility of results/experiments and other research outputs.
- Visualization – Preparation, creation and/or presentation of the published work, specifically visualization/data presentation.
- Writing – original draft – Preparation, creation and/or presentation of the published work, specifically writing the initial draft (including substantive translation).
- Writing – review & editing – Preparation, creation and/or presentation of the published work by those from the original research group, specifically critical review, commentary or revision – including pre- or post-publication stages.