Identificación molecular de microorganismos en cultivos agrícolas, ornamentales y forestales en Costa Rica, 2009-2018. Parte 2
DOI:
https://doi.org/10.15517/am.2024.57347Palabras clave:
identifiación molecular, oligonucleótidos, bacteria, levadura, microbiotaResumen
Introducción. La identificación y detección de microorganismos a partir de técnicas moleculares se ha convertido en un insumo de gran ayuda para el diagnóstico de enfermedades, y de microorganismos presentes en los cultivos. Organismos patogénicos, no patogénicos, controladores biológicos y microorganismos utilizados como competidores, antagonistas o mutualistas pueden aislarse de cultivos agrícolas, ornamentales y forestales. Objetivo. Identificar a nivel taxonómico mediante técnicas moleculares, bacterias y levaduras patogénicas y no patogénicas en cultivos agrícolas, ornamentales y forestales de Costa Rica, y conservar el material en un banco de muestras de ADN. Materiales y métodos. Entre los años 2009 y 2018 el Laboratorio de Técnicas Moleculares del Centro de Investigación en Protección de Cultivos de la Universidad de Costa Rica recibió un total de 181 aislamientos de bacterias y levaduras para detección por medio de PCR tiempo final y tiempo real; e identificación por medio de la secuenciación de regiones específicas. Resultados. Del total de muestras el 94,2 % se analizó por medio de secuenciación y el 5,8 % por PCR. Por medio de detección por PCR en el cultivo de arroz se identificaron bacterias como Burkholderia spp., Acidovorax avenae y Pseudomonas fuscovaginae. Por medio de la secuenciación de la región parcial de 16S se identificaron 172 muestras de especies de bacterias, y cinco muestras de especies de levaduras con la región ITS del ARN ribosomal 18S. Se identificaron microorganismos aislados a partir de dieciocho especies de plantas agrícolas, ornamentales y forestales; entre estos Pseudomonas, Bacillus y Enterobacter y en el caso de levaduras Candida, Pichia y Wickerthamomyces. Conclusión. Esta investigación permitió identificar a nivel taxonómico bacterias y levaduras provenientes de cultivos de Costa Rica. Además, se desarrolla un insumo de consulta y la posibilidad de utilizar a futuro los microorganismos que se encuentran conservados dentro de un banco de muestras de ADN.
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